Evidence map›Paper›PMID 32311011›Full record

ArticleBlood advances2020

CpG methylation in cell-free Epstein-Barr virus DNA in patients with EBV-Hodgkin lymphoma.

Meir Shamay, Jennifer A Kanakry, John S W Low, Netanel A Horowitz, Guy Journo, Anuj Ahuja, Yonatan Eran, Elinor Barzilai, Eldad J Dann, Jennifer Stone and 4 more

Erratum issuedAbstract read
In one paragraph

Article in Blood advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Epigenetic control of the Epstein-Barr lifecycle.Current opinion in virology · 2022
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Meir ShamayDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD.
Jennifer A KanakryDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD.
John S W LowCancer Science Institute of Singapore, National University of Singapore, Singapore.
Netanel A HorowitzDepartment of Hematology and Bone Marrow Transplantation, Rambam Health Care Campus, Haifa, Israel.
Guy JournoDaniella Lee Casper Laboratory in Viral Oncology, Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Anuj AhujaDaniella Lee Casper Laboratory in Viral Oncology, Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Yonatan EranDaniella Lee Casper Laboratory in Viral Oncology, Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Elinor BarzilaiDepartment of Hematology and Bone Marrow Transplantation, Rambam Health Care Campus, Haifa, Israel.
Eldad J DannDepartment of Hematology and Bone Marrow Transplantation, Rambam Health Care Campus, Haifa, Israel.
Jennifer StoneDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD.
Wan Lu WooCancer Science Institute of Singapore, National University of Singapore, Singapore.
Wen-Son HsiehCancer Science Institute of Singapore, National University of Singapore, Singapore.
Rena R XianDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD.
Richard F AmbinderDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD.

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
University of Southern CaliforniaU01CA121947 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MITSUYASU, RONALD T. · 2006 to 2014
$54.7M
Treatment of lymphoma by death receptor induced apoptosisP50CA096888 · NCI · JOHNS HOPKINS UNIVERSITY · PI AMBINDER, RICHARD FREDERICK · 2002 to 2009
$13.6M
Role of KSHV in AIDS MalignanciesP01CA113239 · NCI · JOHNS HOPKINS UNIVERSITY · PI HAYWARD, GARY S · 2006 to 2010
$5.8M
NCI NIH HHS P01 CA113239NCI NIH HHS P30 CA006973NCI NIH HHS P50 CA096888NCI NIH HHS U01 CA121947
6 · The paper itself

Abstract

Epstein-Barr virus (EBV) is associated with a variety of tumors and nonmalignant conditions. Latent EBV genomes in cells, including tumor cells, are often CpG methylated, whereas virion DNA is not CpG methylated. We demonstrate that methyl CpG binding magnetic beads can be used to fractionate among sources of EBV DNA (DNA extracted from laboratory-purified virions vs DNA extracted from latently infected cell lines). We then applied the technique to plasma specimens and showed that this technique can distinguish EBV DNA from patients with EBV-associated tumors (nasopharyngeal carcinoma, Hodgkin lymphoma) and viral DNA from patients without EBV-associated tumors, including immunocompromised patients and patients with EBV(-) Hodgkin lymphoma.

Indexed as

Epstein-Barr Virus InfectionsHodgkin DiseaseDNA, ViralHerpesvirus 4, HumanHumansMethylationDNA, Viral

Identifiers

PMID32311011
PMCPMC7189298

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.