Evidence map›Paper›PMID 32310940›Full record

ArticlePLoS genetics2020

The genomic landscape of undifferentiated embryonal sarcoma of the liver is typified by C19MC structural rearrangement and overexpression combined with TP53 mutation or loss.

Bhuvana A Setty, Goodwin G Jinesh, Michael Arnold, Fredrik Pettersson, Chia-Ho Cheng, Ling Cen, Sean J Yoder, Jamie K Teer, Elsa R Flores, Damon R Reed and 1 more

Abstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. "Update on pediatric primary liver tumors".Virchows Archiv : an international journal of pathology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Pediatric Primary Hepatic Tumors: Diagnostic Considerations.Diagnostics (Basel, Switzerland) · 2021
    Review
  20. Placenta-Derived MicroRNAs in the Pathophysiology of Human Pregnancy.Frontiers in cell and developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Bhuvana A SettyDivision of Hematology/Oncology/BMT, Nationwide Children's Hospital, Columbus, Ohio, United States of America.
Goodwin G JineshChemical Biology and Molecular Medicine Program, Moffitt Cancer Center, Florida, United States of America.
Michael ArnoldDepartment of Pathology and Laboratory Medicine, Nationwide Children's Hospital, Columbus, Ohio, United States of America.ORCID 0000-0002-6921-3720
Fredrik PetterssonDepartment of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, Florida, United States of America.ORCID 0000-0003-4977-769X
Chia-Ho ChengDepartment of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, Florida, United States of America.ORCID 0000-0003-1832-4823
Ling CenDepartment of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, Florida, United States of America.ORCID 0000-0003-4098-852X
Sean J YoderMolecular Genomics Core Facility, Moffitt Cancer Center, Tampa, Florida, United States of America.
Jamie K TeerDepartment of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, Florida, United States of America.ORCID 0000-0003-4513-0282
Elsa R FloresDepartment of Molecular Oncology, Moffitt Cancer Center, Tampa, Florida, United States of America.ORCID 0000-0002-6173-2403
Damon R ReedChemical Biology and Molecular Medicine Program, Moffitt Cancer Center, Florida, United States of America.ORCID 0000-0002-8238-2465
Andrew S BrohlChemical Biology and Molecular Medicine Program, Moffitt Cancer Center, Florida, United States of America.ORCID 0000-0002-0071-0534

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI Christine O'Connell · 1998 to 2026
$93.5M
COG U24 Funding 2026-2027U24CA196173 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI Mignon Lee-Cheun Loh, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$62.5M
Identification of non-coding RNAs to therapeutically target undruggable pathways in metastatic lung adenocarcinoma and squamous cell carcinomaR35CA197452 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI FLORES, ELSA R · 2016 to 2022
$6.4M
COG NCTN Solid Malignancy Integrated Translational Science CenterU10CA180884 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI ADAMSON, PETER C., SKAPEK, STEPHEN X · 2014 to 2018
$1.8M
NCI NIH HHS P30 CA076292NCI NIH HHS R35 CA197452NCI NIH HHS U10 CA180884NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA196173
6 · The paper itself

Abstract

Undifferentiated embryonal sarcoma of the liver (UESL) is a rare and aggressive malignancy. Though the molecular underpinnings of this cancer have been largely unexplored, recurrent chromosomal breakpoints affecting a noncoding region on chr19q13, which includes the chromosome 19 microRNA cluster (C19MC), have been reported in several cases. We performed comprehensive molecular profiling on samples from 14 patients diagnosed with UESL. Congruent with prior reports, we identified structural variants in chr19q13 in 10 of 13 evaluable tumors. From whole transcriptome sequencing, we observed striking expressional activity of the entire C19MC region. Concordantly, in 7 of 7 samples undergoing miRNAseq, we observed hyperexpression of the miRNAs within this cluster to levels >100 fold compared to matched normal tissue or a non-C19MC amplified cancer cell line. Concurrent TP53 mutation or copy number loss was identified in all evaluable tumors with evidence of C19MC overexpression. We find that C19MC miRNAs exhibit significant negative correlation to TP53 regulatory miRNAs and K-Ras regulatory miRNAs. Using RNA-seq we identified that pathways relevant to cellular differentiation as well as mRNA translation machinery are transcriptionally enriched in UESL. In summary, utilizing a combination of next-generation sequencing and high-density arrays we identify the combination of C19MC hyperexpression via chromosomal structural event with TP53 mutation or loss as highly recurrent genomic features of UESL.

Indexed as

Chromosome BreakpointsGene Expression Regulation, NeoplasticMutationAneuploidyChildChild, PreschoolChromosomes, Human, Pair 19FemaleGenes, rasGenomic InstabilityHumansInfantLiver NeoplasmsMaleMicroRNAsNeoplasms, Germ Cell and EmbryonalMicroRNAsTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID32310940
PMCPMC7192511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.