Evidence map›Paper›PMID 32309558›Full record

ArticleDiscoveries (Craiova, Romania)2014

The role of mutations at codons 32, 47, 54, and 90 in HIV-1 protease flap dynamics.

Poorvi Chordia, Tamaria G Dewdney, Bradley Keusch, Benjamin D Kuiper, Kyla Ross, Iulia A Kovari, Rodger MacArthur, Hossein Salimnia, Ladislau C Kovari

Open access · hybridAbstract read
In one paragraph

Article in Discoveries (Craiova, Romania), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Poorvi ChordiaDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Tamaria G DewdneyDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Bradley KeuschDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Benjamin D KuiperDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Kyla RossDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Iulia A KovariDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Rodger MacArthurDepartment of Infectious Diseases, Wayne State University School of Medicine, Detroit, Michigan, USA.
Hossein SalimniaDepartment of Pathology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Ladislau C KovariDepartment of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, Michigan, USA.
Wayne State University · US

Funding

PROTEASE INHIBITOR DESIGN AGAINST MDR HIV VARIANTSR21AI065294 · NIAID · WAYNE STATE UNIVERSITY · PI KOVARI, LADISLAU CHRISTOPHER · 2005 to 2006
$398k
NIAID NIH HHS R21 AI065294
6 · The paper itself

Abstract

Treatment of Human Immunodeficiency Virus remains challenging due to the emergence of drug resistant strains under the selective pressure produced by standard anti-retroviral therapy. To explore the structural mechanisms of drug resistance, we performed 40 ns molecular dynamics simulations on three multi-drug resistant HIV-1 protease clinical isolates from patients attending an infectious diseases clinic in Detroit, MI. We identify a novel structural role for the I47V, V32I, I54M and L90M major resistance mutations in flap opening and closure of MDR-PR isolates. Our studies suggest I47V is involved in flap opening and the interaction between I47V and V32I tethers the flaps to the active site. Also, I54M and L90M may be responsible for asymmetric movement of the protease flaps. These findings can be utilized to improve drug design strategies against MDR HIV-1 PR variants.

Indexed as

drug resistanceHIV-1 proteasemolecular dynamicsprotease mutations

Identifiers

PMID32309558
PMCPMC6941557
OpenAlexW2055868447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.