Evidence map›Paper›PMID 32306405›Full record

ReviewThe Journal of physiology2021

Coupling structure with function in acid-sensing ion channels: challenges in pursuit of proton sensors.

Matthew L Rook, Maria Musgaard, David M MacLean

Open access · bronzeAbstract readReview
In one paragraph

Review in The Journal of physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural basis for proton inhibition of the two-pore domain KStructure (London, England : 1993) · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Acid-sensing ion channels and their role in controlling pain in the post-operative stage.International journal of physiology, pathophysiology and pharmacology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Mechanism of acid-sensing ion channel modulation by Hi1a.The Journal of general physiology · 2024
    Article
  13. Article
  14. A conserved peptide-binding pocket in HyNaC/ASIC ion channels.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Proline substitutions in the ASIC1 β11-12 linker slow desensitization.bioRxiv : the preprint server for biology · 2024
    Article
  19. Progress on functions of intracellular domainZhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2024
    Review
  20. Structural basis for excitatory neuropeptide signaling.Nature structural & molecular biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Matthew L RookGraduate Program in Cellular and Molecular Pharmacology and Physiology, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY, 14642, USA.ORCID 0000-0002-5332-7678
Maria MusgaardDepartment of Chemistry and Biomolecular Sciences, University of Ottawa, 75 Laurier Ave E, Ottawa, ON, K1N 6N5, Canada.ORCID 0000-0001-6096-9014
David M MacLeanDepartment of Pharmacology and Physiology, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY, 14642, USA.ORCID 0000-0001-8294-6075
University of Rochester Medical Center · USUniversity of Ottawa · CA

Funding

Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
3D structure and function of Acid Sensing Ion channelsR00NS094761 · NINDS · UNIVERSITY OF ROCHESTER · PI MACLEAN, DAVID MALCOM · 2017 to 2019
$747k
NIGMS NIH HHS T32 GM068411NINDS NIH HHS R00 NS094761
6 · The paper itself

Abstract

Acid-sensing ion channels (ASICs) are a class of trimeric cation-selective ion channels activated by changes in pH within the physiological range. They are widely expressed in the central and peripheral nervous systems where they participate in a range of physiological and pathophysiological situations such as learning and memory, pain sensation, fear and anxiety, substance abuse and cell death. ASICs are localized to cell bodies and dendrites, including the postsynaptic density, and within the last 5 years several examples of proton-evoked ASIC excitatory postsynaptic currents have emerged. Thus, ASICs have become bona fide neurotransmitter-gated ion channels, activated by the smallest neurotransmitter possible: protons. Here we review how protons are thought to drive the conformational changes associated with ASIC activation and desensitization. In particular, we weigh the evidence for and against the so-called 'acidic pocket' being a vital proton sensor and discuss the emerging role of the β11-12 linker as a desensitization switch or 'molecular clutch'. We also examine how proton-induced conformational changes pose unique challenges to classical molecular dynamics simulations, as well as some possible solutions. Given the emergence of new methodologies and structures, the coming years will probably see many advances in the study of acid-sensing ion channels.

Indexed as

Acid Sensing Ion ChannelsProtonsHydrogen-Ion ConcentrationAcid Sensing Ion ChannelsProtonsacid-sensing ion channelsASICsdesensitizationgatingmolecular dynamics

Identifiers

PMID32306405
PMCPMC7869053
OpenAlexW3016676170

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.