Evidence map›Paper›PMID 32303053›Full record

ArticleNeuropsychopharmacology : official publication of the American College of Neuropsychopharmacology2020

Integrated DNA methylation analysis reveals a potential role for ANKRD30B in Williams syndrome.

Ryo Kimura, Roy Lardenoije, Kiyotaka Tomiwa, Yasuko Funabiki, Masatoshi Nakata, Shiho Suzuki, Tomonari Awaya, Takeo Kato, Shin Okazaki, Toshiya Murai and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Williams syndrome.Nature reviews. Disease primers · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 4 countries.

Ryo KimuraDepartment of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan. kimura.ryo.2w@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0003-3220-991X
Roy LardenoijeDepartment of Psychiatry and Psychotherapy, University Medical Center Göttingen, Göttingen, Germany.
Kiyotaka TomiwaDepartment of Pediatrics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Yasuko FunabikiDepartment of Cognitive and Behavioral Science, Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan.
Masatoshi NakataDepartment of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Shiho SuzukiDepartment of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Tomonari AwayaDepartment of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0002-9004-3172
Takeo KatoDepartment of Pediatrics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Shin OkazakiDepartment of Child Neurology, Osaka City General Hospital, Osaka, Japan.
Toshiya MuraiDepartment of Psychiatry, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Toshio HeikeDepartment of Pediatrics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Bart P F RuttenDivision of Neuroscience, School for Mental Health and Neuroscience (MHeNS), Department of Psychiatry and Neuropsychology, Maastricht University Medical Centre, Maastricht, The Netherlands.ORCID http://orcid.org/0000-0002-9834-6346
Masatoshi HagiwaraDepartment of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan. hagiwara.masatoshi.8c@kyoto-u.ac.jp.
Kyoto University · JPHarvard University · USMaastricht University Medical Centre · NLOsaka City General Hospital · JP

Funding

Japan Agency for Medical Research and Development (AMED) JP16gm0510008Japan Agency for Medical Research and Development (AMED) JP18kk0305003h0003MEXT | Japan Society for the Promotion of Science (JSPS) 15H05721MEXT | Japan Society for the Promotion of Science (JSPS) 19K08251
6 · The paper itself

Abstract

Williams syndrome (WS) is a rare genetic disorder, caused by a microdeletion at the 7q11.23 region. WS exhibits a wide spectrum of features including hypersociability, which contrasts with social deficits typically associated with autism spectrum disorders. The phenotypic variability in WS likely involves epigenetic modifications; however, the nature of these events remains unclear. To better understand the role of epigenetics in WS phenotypes, we integrated DNA methylation and gene expression profiles in blood from patients with WS and controls. From these studies, 380 differentially methylated positions (DMPs), located throughout the genome, were identified. Systems-level analysis revealed multiple co-methylation modules linked to intermediate phenotypes of WS, with the top-scoring module related to neurogenesis and development of the central nervous system. Notably, ANKRD30B, a promising hub gene, was significantly hypermethylated in blood and downregulated in brain tissue from individuals with WS. Most CpG sites of ANKRD30B in blood were significantly correlated with brain regions. Furthermore, analyses of gene regulatory networks (GRNs) yielded master regulator transcription factors associated with WS. Taken together, this systems-level approach highlights the role of epigenetics in WS, and provides a possible explanation for the complex phenotypes observed in patients with WS.

Indexed as

Autism Spectrum DisorderWilliams SyndromeDNA MethylationEpigenesis, GeneticHumansPhenotype

Identifiers

PMID32303053
PMCPMC7419304
OpenAlexW3017308777

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.