Evidence map›Paper›PMID 32300930›Full record

ArticleVirus genes2020

Variability of E2 protein-coding sequences of bovine viral diarrhea virus in Polish cattle.

Paweł Mirosław, Mirosław P Polak

Open access · hybridAbstract read
In one paragraph

Article in Virus genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Paweł MirosławDepartment of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Puławy, Poland. pawel.miroslaw@piwet.pulawy.pl.
Mirosław P PolakDepartment of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100, Puławy, Poland.
National Veterinary Research Institute · PL

Funding

KNOW (Leading National Research Centre) Scientific Consortium "Healthy Animal - Safe Food" 05-1/KNOW2/2015
6 · The paper itself

Abstract

Bovine viral diarrhea virus (BVDV) belongs to the Pestivirus genus of the Flaviviridae family and has worldwide distribution, being one of the main causes of economic losses in cattle raising. The genome of pestiviruses is a single strand of positive-sense RNA with a length of 12.3 kb, which encodes one open reading frame flanked by untranslated regions. E2 glycoprotein is required for binding to cell-surface receptors and it also contains major antigenic determinants. The nucleotide sequence coding E2 is the most variable part of the viral genome. The heterogeneity that exists among circulating strains causes problems in the development of effective vaccines and reliable diagnostics. In this study, and for the first time analysis was made of the E2 glycoprotein coding sequences of 14 Polish BVDV-1 strains which belong to four subtypes: 1b (n = 7), 1f (n = 3), 1s (n = 3), and 1r (n = 1). These sequences showed evidence of strong purifying (negative) selection. However, we also identified positively selected sites. The availability of E2 sequences of Polish BVDV strains for reference, knowledge gained through epitope prediction attempts, and information on protein glycosylation sites can afford a better understanding of host-pathogen interactions.

Indexed as

AnimalsBovine Virus Diarrhea-Mucosal DiseaseCattleDiarrhea Virus 1, Bovine ViralGenome, ViralGenotypeOpen Reading FramesPhylogenyPolandBovine viral diarrhea virusE2 glycoproteinPestivirusPolymorphismSequencing

Identifiers

PMID32300930
PMCPMC7329765
OpenAlexW3016426606

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.