Evidence map›Paper›PMID 32300339›Full record

ArticleFrontiers in microbiology2020

Substrate-Dependent Fermentation of Bamboo in Giant Panda Gut Microbiomes: Leaf Primarily to Ethanol and Pith to Lactate.

Alberto Scoma, Way Cern Khor, Marta Coma, Robert Heyer, Ruben Props, Jonas Schoelynck, Tim Bouts, Dirk Benndorf, Desheng Li, Hemin Zhang and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Succession of Intestinal Microbial Structure of Giant Pandas (Animals : an open access journal from MDPI · 2021
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alberto ScomaCenter for Microbial Ecology and Technology, University of Ghent, Ghent, Belgium.
Way Cern KhorCenter for Microbial Ecology and Technology, University of Ghent, Ghent, Belgium.
Marta ComaCenter for Microbial Ecology and Technology, University of Ghent, Ghent, Belgium.
Robert HeyerBioprocess Engineering, Otto von Guericke University of Magdeburg, Magdeburg, Germany.
Ruben PropsCenter for Microbial Ecology and Technology, University of Ghent, Ghent, Belgium.
Jonas SchoelynckDepartment of Biology, University of Antwerp, Antwerp, Belgium.
Tim BoutsPairi Daiza Foundation, Brugelette, Belgium.
Dirk BenndorfBioprocess Engineering, Otto von Guericke University of Magdeburg, Magdeburg, Germany.
Desheng LiChina Conservation and Research Centre for Giant Panda, Dujiangyan City, China.
Hemin ZhangChina Conservation and Research Centre for Giant Panda, Dujiangyan City, China.
Korneel RabaeyCenter for Microbial Ecology and Technology, University of Ghent, Ghent, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The giant panda is known worldwide for having successfully moved to a diet almost exclusively based on bamboo. Provided that no lignocellulose-degrading enzyme was detected in panda's genome, bamboo digestion is believed to depend on its gut microbiome. However, pandas retain the digestive system of a carnivore, with retention times of maximum 12 h. Cultivation of their unique gut microbiome under controlled laboratory conditions may be a valid tool to understand giant pandas' dietary habits, and provide valuable insights about what component of lignocellulose may be metabolized. Here, we collected gut microbiomes from fresh fecal samples of a giant panda (either entirely green or yellow stools) and supplied them with green leaves or yellow pith (i.e., the peeled stem). Microbial community composition was substrate dependent, and resulted in markedly different fermentation profiles, with yellow pith fermented to lactate and green leaves to lactate, acetate and ethanol, the latter to strikingly high concentrations (∼3%, v:v, within 3.5 h). Microbial metaproteins pointed to hemicellulose rather than cellulose degradation. The alpha-amylase from the giant panda (E.C. 3.2.1.1) was the predominant identified metaprotein, particularly in reactors inoculated with pellets derived from fecal samples (up to 60%). Gut microbiomes assemblage was most prominently impacted by the change in substrate (either leaf or pith). Removal of soluble organics from inocula to force lignocellulose degradation significantly enriched

Indexed as

alpha amylasecelluloseethanolfermentationgiant pandagut microbiomehemicelluloselignocellulose

Identifiers

PMID32300339
PMCPMC7145396

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.