Evidence map›Paper›PMID 32299921›Full record

ArticleScience (New York, N.Y.)2020

The Ccr4-Not complex monitors the translating ribosome for codon optimality.

Robert Buschauer, Yoshitaka Matsuo, Takato Sugiyama, Ying-Hsin Chen, Najwa Alhusaini, Thomas Sweet, Ken Ikeuchi, Jingdong Cheng, Yasuko Matsuki, Risa Nobuta and 7 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 173 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
173citing papers in PubMed, 1 pooled it
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

173 citing papers in PubMed, 1 synthesis or guideline pooled it, 294 citations in OpenAlex.

  1. Pooled it
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  11. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
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113 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 3 countries.

Robert Buschauer *Gene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.ORCID 0000-0002-5794-4841
Yoshitaka Matsuo *Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0001-9895-0028
Takato SugiyamaGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0001-8364-7050
Ying-Hsin ChenCenter for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Najwa AlhusainiCenter for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.ORCID 0000-0001-6489-1285
Thomas SweetCenter for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Ken IkeuchiGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.ORCID 0000-0002-9578-7920
Jingdong ChengGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.ORCID 0000-0003-4442-377X
Yasuko MatsukiGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0002-4790-8054
Risa NobutaGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0001-7826-9569
Andrea GilmozziGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.
Otto BerninghausenGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.ORCID 0000-0002-9255-0522
Petr TesinaGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.ORCID 0000-0002-5227-1799
Thomas BeckerGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany.ORCID 0000-0001-8458-2738
Jeff CollerCenter for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA. beckmann@genzentrum.lmu.de toshifumi.inada.a3@tohoku.ac.jp jmc71@case.edu.ORCID 0000-0001-5662-8110
Toshifumi InadaGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan. beckmann@genzentrum.lmu.de toshifumi.inada.a3@tohoku.ac.jp jmc71@case.edu.ORCID 0000-0002-2695-588X
Roland BeckmannGene Center and Department of Biochemistry, University of Munich, 81377 Munich, Germany. beckmann@genzentrum.lmu.de toshifumi.inada.a3@tohoku.ac.jp jmc71@case.edu.ORCID 0000-0003-4291-3898
Gene Therapy Laboratory · FRTohoku University · JPCase Western Reserve University · US

Funding

Understanding the Interconnection Between mRNA turnover and mRNA TranslationR01GM125086 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI COLLER, JEFFERY · 2017 to 2020
$1.6M
Determining the influence of codon optimality on mRNA translation and decayR01GM118018 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI COLLER, JEFFERY · 2017 to 2020
$1.3M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Deutsche ForschungsgemeinschaftNIGMS NIH HHS R01 GM118018NIGMS NIH HHS R01 GM125086NIH HHS S10 OD018174
6 · The paper itself

Abstract

Control of messenger RNA (mRNA) decay rate is intimately connected to translation elongation, but the spatial coordination of these events is poorly understood. The Ccr4-Not complex initiates mRNA decay through deadenylation and activation of decapping. We used a combination of cryo-electron microscopy, ribosome profiling, and mRNA stability assays to examine the recruitment of Ccr4-Not to the ribosome via specific interaction of the Not5 subunit with the ribosomal E-site in

Indexed as

CodonPeptide Chain Elongation, TranslationalRNA StabilityCryoelectron MicroscopyEukaryotic Translation Initiation Factor 5AMultiprotein ComplexesPeptide Initiation FactorsProtein Conformation, alpha-HelicalRepressor ProteinsRibonucleasesRibosomesRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsCCR4 protein, S cerevisiaeCodonEukaryotic Translation Initiation Factor 5AMOT2 protein, S cerevisiaeMultiprotein ComplexesNOT5 protein, S cerevisiaePeptide Initiation FactorsRepressor ProteinsRibonucleasesRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID32299921
PMCPMC8663607
OpenAlexW3016895535

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.