Evidence map›Paper›PMID 32298259›Full record

ArticlePLoS computational biology2020

Unveiling dynamic metabolic signatures in human induced pluripotent and neural stem cells.

João Vasconcelos E Sá, Daniel Simão, Ana P Terrasso, Marta M Silva, Catarina Brito, Inês A Isidro, Paula M Alves, Manuel J T Carrondo

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Cancer stem cell fate determination: mito-nuclear communication.Cell communication and signaling : CCS · 2023
    Review
  3. Role of histone lactylation interference RNA mFrontiers in cell and developmental biology · 2023
    Review
  4. Cell Biology Meets Cell Metabolism: Energy Production Is Similar in Stem Cells and in Cancer Stem Cells in Brain and Bone Marrow.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2022
    Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

João Vasconcelos E SáiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.ORCID 0000-0003-4078-3452
Daniel SimãoiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.ORCID 0000-0002-7532-8081
Ana P TerrassoiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.
Marta M SilvaiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.ORCID 0000-0002-1069-7193
Catarina BritoiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.
Inês A IsidroiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.
Paula M AlvesiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.
Manuel J T CarrondoiBET, Instituto de Biologia Experimental e Tecnológica, Oeiras, Portugal.
Instituto de Biologia Experimental e Tecnológica · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolism plays an essential role in cell fate decisions. However, the methods used for metabolic characterization and for finding potential metabolic regulators are still based on characterizing cellular metabolic steady-state which is dependent on the extracellular environment. In this work, we hypothesized that the response dynamics of intracellular metabolic pools to extracellular stimuli is controlled in a cell type-specific manner. We applied principles of process dynamics and control to human induced pluripotent stem cells (hiPSC) and human neural stem cells (hNSC) subjected to a sudden extracellular glutamine step. The fold-changes of steady-states and the transient profiles of metabolic pools revealed that dynamic responses were reproducible and cell type-specific. Importantly, many amino acids had conserved dynamics and readjusted their steady state concentration in response to the increased glutamine influx. Overall, we propose a novel methodology for systematic metabolic characterization and identification of potential metabolic regulators.

Indexed as

Induced Pluripotent Stem CellsNeural Stem CellsBioreactorsCells, CulturedComputational BiologyExtracellular SpaceGlutamineHumansMetabolic Networks and PathwaysGlutamine

Identifiers

PMID32298259
PMCPMC7188302
OpenAlexW3016695810

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.