Evidence map›Paper›PMID 32298120›Full record

ArticleJournal of medicinal chemistry2020

Discovery and Structure-Activity Relationship Study of (

Theresa D Manz, Sindhu Carmen Sivakumaren, Fleur M Ferguson, Tinghu Zhang, Adam Yasgar, Hyuk-Soo Seo, Scott B Ficarro, Joseph D Card, Hyeseok Shim, Chandrasekhar V Miduturu and 7 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Structural basis for high-affinity inhibitor binding to lipid kinases PIP4K2A and PIP4K2B.Acta crystallographica. Section D, Structural biology · 2026
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  3. Review
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  9. Review
  10. Development of potent and selective degraders of PI5P4Kγ.European journal of medicinal chemistry · 2023
    Article
  11. Article
  12. Article
  13. Review
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  16. Review
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  19. Pharmacological inhibition of PI5P4Kα/β disrupts cell energy metabolism and selectively kills p53-null tumor cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Theresa D ManzDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.
Sindhu Carmen SivakumarenDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.
Fleur M FergusonDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.ORCID 0000-0003-4091-7617
Tinghu ZhangDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.
Adam YasgarNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850 United States.ORCID 0000-0001-7350-1402
Hyuk-Soo SeoDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.ORCID 0000-0003-0646-2102
Scott B FicarroDepartment of Cancer Biology and Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, Massachusetts, 02215, United States.
Joseph D CardDepartment of Cancer Biology and Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, Massachusetts, 02215, United States.
Hyeseok ShimMeyer Cancer Center, Weill Cornell Medicine and New York Presbyterian Hospital, New York, New York 10065, United States.
Chandrasekhar V MiduturuDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.
Anton SimeonovNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850 United States.
Min ShenNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850 United States.
Jarrod A MartoDepartment of Cancer Biology and Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, Massachusetts, 02215, United States.
Sirano Dhe-PaganonDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.
Matthew D HallNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850 United States.ORCID 0000-0002-5073-442X
Lewis C CantleyMeyer Cancer Center, Weill Cornell Medicine and New York Presbyterian Hospital, New York, New York 10065, United States.
Nathanael S GrayDepartment of Cancer Biology, Dana-Farber Cancer Institute, 360 Longwood Avenue, Boston, Massachusetts 02215, United States.ORCID 0000-0001-5354-7403
Harvard University · USNational Institutes of Health · USBrigham and Women's Hospital · USNewYork–Presbyterian Hospital · US

Funding

Role of Phosphoinositides and Protein Kinases in the control of Cancer MetabolismR35CA197588 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEWIS C. CANTLEY · 2016 to 2026
$10.2M
Project 3: Physical and Metabolic Constraints of Cancer Cell InvasionU54CA210184 · NCI · CORNELL UNIVERSITY · PI CANTLEY, LEWIS C., FISCHBACH, CLAUDIA · 2016 to 2020
$10.2M
The Role of PI3K in Growth RegulationR01GM041890 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI CANTLEY, LEWIS C. · 1990 to 2016
$4.1M
Development of covalent PIP4K2 inhibitors for the treatment of p53 deficient lung tumorsR01CA197329 · NCI · DANA-FARBER CANCER INST · PI GRAY, NATHANAEL SCHIANDER · 2015 to 2019
$2.7M
Targeting the Novel PI5P4K Pathway to Induce Glioblastoma SenescenceR01NS089815 · NINDS · UNIVERSITY OF CINCINNATI · PI SASAKI, ATSUO · 2014 to 2018
$1.7M
Tools for the understudied kinase PNK3R03CA250020 · NCI · DANA-FARBER CANCER INST · PI MARTO, JARROD A. · 2019 to 2019
$178k
NCI NIH HHS R01 CA197329NCI NIH HHS R03 CA250020NCI NIH HHS R35 CA197588NCI NIH HHS U54 CA210184NIGMS NIH HHS R01 GM041890NINDS NIH HHS R01 NS089815
6 · The paper itself

Abstract

Due to their role in many important signaling pathways, phosphatidylinositol 5-phosphate 4-kinases (PI5P4Ks) are attractive targets for the development of experimental therapeutics for cancer, metabolic, and immunological disorders. Recent efforts to develop small molecule inhibitors for these lipid kinases resulted in compounds with low- to sub-micromolar potencies. Here, we report the identification of CVM-05-002 using a high-throughput screen of PI5P4Kα against our in-house kinase inhibitor library. CVM-05-002 is a potent and selective inhibitor of PI5P4Ks, and a 1.7 Å X-ray structure reveals its binding interactions in the ATP-binding pocket. Further investigation of the structure-activity relationship led to the development of compound

Indexed as

Crystallography, X-RayDrug DiscoveryHEK293 CellsHigh-Throughput Screening AssaysHumansMolecular StructurePhosphotransferases (Alcohol Group Acceptor)Protein BindingProtein Kinase InhibitorsPyridinesSmall Molecule LibrariesStructure-Activity RelationshipSulfonamidesThiazolidinesPhosphotransferases (Alcohol Group Acceptor)Protein Kinase InhibitorsPyridinesSmall Molecule LibrariesSulfonamidesThiazolidines

Identifiers

PMID32298120
PMCPMC7292230
OpenAlexW3016653743

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.