Evidence map›Paper›PMID 32295612›Full record

ArticleBMC veterinary research2020

Detection of bovine viral diarrhea virus genotype 1 in aerosol by a real time RT-PCR assay.

Peili Hou, Yaru Xu, Hongmei Wang, Hongbin He

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Peili HouRuminant Diseases Research Center, College of Life Sciences, Shandong Normal University, No.88 East Wenhua Road, Jinan City, Shandong Province, China.
Yaru XuRuminant Diseases Research Center, College of Life Sciences, Shandong Normal University, No.88 East Wenhua Road, Jinan City, Shandong Province, China.
Hongmei WangRuminant Diseases Research Center, College of Life Sciences, Shandong Normal University, No.88 East Wenhua Road, Jinan City, Shandong Province, China. hongmeiwang@sdnu.edu.cn.
Hongbin HeRuminant Diseases Research Center, College of Life Sciences, Shandong Normal University, No.88 East Wenhua Road, Jinan City, Shandong Province, China. hongbinhe@sdnu.edu.cn.
Shandong Normal University · CN

Funding

Key Technology Research and Development Program of Shandong 2018GNC113011National key Research and Development Program of China 2018YFD0501600National Natural Science Fund of China 31872490
6 · The paper itself

Abstract

backgroundAs a pestivirus of the Flaviviridae family, bovine viral diarrhea virus (BVDV), has imposed a large burden on animal husbandry worldwide, and such virus can be transmitted mainly through direct contact with other infected animals and probably via aerosols. In the present study, we aimed to develop a real-time RT-PCR method for detection of BVDV-1 in aerosol samples.

methodsA pair of primers specific for highly conserved regions of the BVDV-1 5'-UTR was designed. The standard curve and sensitivity of the developed assay were assessed based on 10-fold serial dilutions of RNA molecular standard. The specificity of the assay was evaluated with other pestiviruses and infectious bovine viruses. The clinical performance was examined by testing 169 aerosol samples.

resultsThe results showed that a good linear relationship existed between the standard curve and the concentration of template. The lowest detection limit was 5.2 RNA molecules per reaction. This assay was specific for detection of BVDV-1, and no amplification was found for other pestiviruses such as classical swine fever virus (CSFV), border disease virus (BDV), and common infectious bovine viruses, including BVDV-2, infectious bovine rhinotracheitis virus (IBRV), bovine parainfluenza virus type 3 (BPIV-3), bovine respiratory syncytial virus (BRSV), bovine ephemeral fever virus (BEFV) and bovine coronavirus (BcoV). The assay was highly reproducible with low variation coefficient values (CVs) for intra-assay and inter-assay. A total of 169 aerosol samples collected from six dairy herds were tested using this method. The results showed that the positive detection rate of BVDV-1 was 17.2% (29/169), which was significantly higher compared with the conventional RT-PCR. Additionally, the positive samples (n = 29) detected by real-time RT-PCR were verified by BVDV RPA-LFD, and a concordance rate of 100% was obtained between them.

conclusionsTaken together, we developed a real-time RT-PCR assay for quantitative analysis of BVDV-1 in aerosol samples, and our finding provided valuable insights into the risk on aerosol transmission of BVDV-1.

Indexed as

Genotype5' Untranslated RegionsAerosolsAir MicrobiologyAnimalsDiarrhea Virus 1, Bovine ViralReal-Time Polymerase Chain ReactionReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionSensitivity and Specificity5' Untranslated RegionsAerosolsBovine viral diarrhea virus (BVDV)BVDV-1 aerosolDetectionReal-time RT-PCR

Identifiers

PMID32295612
PMCPMC7159024
OpenAlexW3015735467

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.