ArticleDatabase : the journal of biological databases and curation2020
ASFVdb: an integrative resource for genomic and proteomic analyses of African swine fever virus.
Article in Database : the journal of biological databases and curation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.Communications chemistry · 2024Article
- Review
- Development and application of a TaqMan-based real-time PCR method for the detection of the ASFV MGF505-7R gene.Frontiers in veterinary science · 2023Article
- Systematic identification and characterization of repeat sequences in African swine fever virus genomes.Veterinary research · 2022Article
- Effects of the NF-κB Signaling Pathway Inhibitor BAY11-7082 in the Replication of ASFV.Viruses · 2022Article
- The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine.Database : the journal of biological databases and curation · 2021Article
- African Swine Fever Virus (ASFV): Biology, Genomics and Genotypes Circulating in Sub-Saharan Africa.Viruses · 2021Review
- The first genotype II African swine fever virus isolated in Africa provides insight into the current Eurasian pandemic.Scientific reports · 2021Article
- Rapid and sensitive RPA-Cas12a-fluorescence assay for point-of-care detection of African swine fever virus.PloS one · 2021Article
- Lateral Flow Assay for the Detection of African Swine Fever Virus Antibodies Using Gold Nanoparticle-Labeled Acid-Treated p72.Frontiers in chemistry · 2021Article
- The African Swine Fever Virus (ASFV) Topoisomerase II as a Target for Viral Prevention and Control.Vaccines · 2020Review
- Coding-Complete Genome Sequence of an African Swine Fever Virus Strain Liv13/33 Isolate from Experimental Transmission between Pigs and Ornithodoros moubata Ticks.Microbiology resource announcements · 2020Article
- The African Swine Fever Virus Transcriptome.Journal of virology · 2020Article
- Progress Toward Development of Effective and Safe African Swine Fever Virus Vaccines.Frontiers in veterinary science · 2020Review
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Authors and funding
2 authors.
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Abstract
The recent outbreaks of African swine fever (ASF) in China and Europe have threatened the swine industry globally. To control the transmission of ASF virus (ASFV), we developed the African swine fever virus database (ASFVdb), an online data visualization and analysis platform for comparative genomics and proteomics. On the basis of known ASFV genes, ASFVdb reannotates the genomes of every strain and newly annotates 5352 possible open reading frames (ORFs) of 45 strains. Moreover, ASFVdb performs a thorough analysis of the population genetics of all the published genomes of ASFV strains and performs functional and structural predictions for all genes. Users can obtain not only basic information for each gene but also its distribution in strains and conserved or high mutation regions, possible subcellular location and topology. In the genome browser, ASFVdb provides a sliding window for results of population genetic analysis, which facilitates genetic and evolutionary analyses at the genomic level. The web interface was constructed based on SWAV 1.0. ASFVdb is freely accessible at http://asfvdb.popgenetics.net.
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