Evidence map›Paper›PMID 32293269›Full record

ArticleBMC plant biology2020

Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection.

Min Xu, Cheng-Li Liu, Yu Fu, Zhi-Wen Liao, Pan-Yang Guo, Rui Xiong, Yu Cheng, Shuang-Shuang Wei, Jia-Quan Huang, Hua Tang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Plant-AssociatedJournal of fungi (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Min XuHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Cheng-Li LiuHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Yu FuHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Zhi-Wen LiaoHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Pan-Yang GuoHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Rui XiongHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Yu ChengHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Shuang-Shuang WeiHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China.
Jia-Quan HuangHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China. jqhuang@hainanu.edu.cn.
Hua TangHainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, No.58 Renmin Avenue, Haikou, 570228, Hainan, People's Republic of China. thtiger@163.com.
Hainan University · CN

Funding

Species and Varieties Resources Protection Project of Ministry of Agriculture and Rural Affairs of China 18190033-1.Germplasm Protection of Pitayathe Construction of World First Class Discipline of Hainan University RZZX201904the Crop Science Postgraduate Innovation Project of Hainan University Tropical Agriculture and Forestry College ZWCX2018007
6 · The paper itself

Abstract

backgroundCanker disease caused by Neoscytalidium dimidiatum is a devastating disease resulting in a major loss to the pitaya industry. However, resistance proteins in plants play crucial roles to against pathogen infection. Among resistance proteins, the leucine-rich repeat (LRR) protein is a major family that plays crucial roles in plant growth, development, and biotic and abiotic stress responses, especially in disease defense.

resultsIn the present study, a transcriptomics analysis identified a total of 272 LRR genes, 233 of which had coding sequences (CDSs), in the plant pitaya (Hylocereus polyrhizus) in response to fungal Neoscytalidium dimidiatum infection. These genes were divided into various subgroups based on specific domains and phylogenetic analysis. Molecular characterization, functional annotation of proteins, and an expression analysis of the LRR genes were conducted. Additionally, four LRR genes (CL445.Contig4_All, Unigene28_All, CL28.Contig2_All, and Unigene2712_All, which were selected because they had the four longest CDSs were further assessed using quantitative reverse transcription PCR (qRT-PCR) at different fungal infection stages in different pitaya species (Hylocereus polyrhizus and Hylocereus undatus), in different pitaya tissues, and after treatment with salicylic acid (SA), methyl jasmonate (MeJA), and abscisic acid (ABA) hormones. The associated protein functions and roles in signaling pathways were identified.

conclusionsThis study provides a comprehensive overview of the HpLRR family genes at transcriptional level in pitaya in response to N. dimidiatum infection, it will be helpful to understand the molecular mechanism of pitaya canker disease, and lay a strong foundation for further research.

Indexed as

AscomycotaGene Expression Regulation, PlantAbscisic AcidAcetatesCactaceaeCyclopentanesLeucine-Rich Repeat ProteinsOxylipinsPhylogenyPlant DiseasesProteinsSalicylic AcidStress, PhysiologicalAbscisic AcidAcetatesCyclopentanesLeucine-Rich Repeat Proteinsmethyl jasmonateOxylipinsProteinsSalicylic AcidCanker diseaseExpression analysisLeucine-rich-repeat genesNeoscytalidium dimidiatumPitayaqRT-PCRTranscriptomics

Identifiers

PMID32293269
PMCPMC7161156
OpenAlexW3015200623

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.