Evidence map›Paper›PMID 32293266›Full record

ArticleBMC microbiology2020

Identification of a virulence tal gene in the cotton pathogen, Xanthomonas citri pv. malvacearum strain Xss-V

Fazal Haq, Shiwang Xie, Kunxuan Huang, Syed Mashab Ali Shah, Wenxiu Ma, Lulu Cai, Xiameng Xu, Zhengyin Xu, Sai Wang, Lifang Zou and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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  4. APlant communications · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Fazal HaqSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Shiwang XieSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Kunxuan HuangSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Syed Mashab Ali ShahSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Wenxiu MaSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Lulu CaiSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Xiameng XuSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Zhengyin XuSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Sai WangSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Lifang ZouSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Bo ZhuSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China.
Gongyou ChenSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by the Ministry of Agriculture, Shanghai, 200240, China. gyouchen@sjtu.edu.cn.
Shanghai Jiao Tong University · CN

Funding

National Natural Science Foundation of China 31830072, 31230059
6 · The paper itself

Abstract

backgroundBacterial blight of cotton (BBC), which is caused by the bacterium Xanthomonas citri pv. malvacearum (Xcm), is a destructive disease in cotton. Transcription activator-like effectors (TALEs), encoded by tal-genes, play critical roles in the pathogenesis of xanthomonads. Characterized strains of cotton pathogenic Xcm harbor 8-12 different tal genes and only one of them is functionally decoded. Further identification of novel tal genes in Xcm strains with virulence contributions are prerequisite to decipher the Xcm-cotton interactions.

resultsIn this study, we identified six tal genes in Xss-V

conclusionsOverall, the results demonstrated that Tal2 is a major pathogenicity factor in Xcm strain Xss-V

Indexed as

Bacterial ProteinsChinaDNA Transposable ElementsGossypiumINDEL MutationPhylogenyPlant DiseasesPlasmidsPolymorphism, Restriction Fragment LengthSequence Analysis, DNATranscription Activator-Like EffectorsVirulence FactorsXanthomonasBacterial ProteinsDNA Transposable ElementsTranscription Activator-Like EffectorsVirulence FactorsBacterial blight of cottonTranscription-activator-like effectorVirulenceXanthomonas citri pv. malvacearum

Identifiers

PMID32293266
PMCPMC7160923
OpenAlexW3015892287

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.