Evidence map›Paper›PMID 32293250›Full record

ArticleBMC genomics2020

Stress-mediated convergence of splicing landscapes in male and female rock doves.

Andrew S Lang, Suzanne H Austin, Rayna M Harris, Rebecca M Calisi, Matthew D MacManes

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Andrew S LangDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, USA. Andrew.Lang.VT@gmail.com.ORCID http://orcid.org/0000-0002-9368-1751
Suzanne H AustinDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, USA.
Rayna M HarrisDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, USA.
Rebecca M CalisiDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, USA.
Matthew D MacManesDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, USA.
University of California, Davis · USUniversity of New Hampshire · US

Funding

Uncovering physiological and genomic mechanisms that enable dehydration tolerance in rodentsR35GM128843 · NIGMS · UNIVERSITY OF NEW HAMPSHIRE · PI MACMANES, MATTHEW DAVID · 2018 to 2025
$2.5M
National Science Foundation 1455960NIGMS NIH HHS R35 GM128843
6 · The paper itself

Abstract

backgroundThe process of alternative splicing provides a unique mechanism by which eukaryotes are able to produce numerous protein products from the same gene. Heightened variability in the proteome has been thought to potentiate increased behavioral complexity and response flexibility to environmental stimuli, thus contributing to more refined traits on which natural and sexual selection can act. While it has been long known that various forms of environmental stress can negatively affect sexual behavior and reproduction, we know little of how stress can affect the alternative splicing associated with these events, and less still about how splicing may differ between sexes. Using the model of the rock dove (Columba livia), our team previously uncovered sexual dimorphism in the basal and stress-responsive gene transcription of a biological system necessary for facilitating sexual behavior and reproduction, the hypothalamic-pituitary-gonadal (HPG) axis. In this study, we delve further into understanding the mechanistic underpinnings of how changes in the environment can affect reproduction by testing the alternative splicing response of the HPG axis to an external stressor in both sexes.

resultsThis study reveals dramatic baseline differences in HPG alternative splicing between males and females. However, after subjecting subjects to a restraint stress paradigm, we found a significant reduction in these differences between the sexes. In both stress and control treatments, we identified a higher incidence of splicing activity in the pituitary in both sexes as compared to other tissues. Of these splicing events, the core exon event is the most abundant form of splicing and more frequently occurs in the coding regions of the gene. Overall, we observed less splicing activity in the 3'UTR (untranslated region) end of transcripts than the 5'UTR or coding regions.

conclusionsOur results provide vital new insight into sex-specific aspects of the stress response on the HPG axis at an unprecedented proximate level. Males and females uniquely respond to stress, yet exhibit splicing patterns suggesting a convergent, optimal splicing landscape for stress response. This information has the potential to inform evolutionary theory as well as the development of highly-specific drug targets for stress-induced reproductive dysfunction.

Indexed as

3' Untranslated Regions5' Untranslated RegionsAlternative SplicingAnimalsColumbidaeExonsFemaleGene OntologyGonadsMaleNucleotide MotifsReproductionRNA IsoformsRNA-SeqRNA SplicingSex Characteristics3' Untranslated Regions5' Untranslated RegionsRNA IsoformsAlternative splicingAvian genomicsHPG AxisOrganismal responseReproductive AxisRNA-seqStress response

Identifiers

PMID32293250
PMCPMC7092514
OpenAlexW3028110507

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.