Evidence map›Paper›PMID 32293027›Full record

ArticleJournal of fish biology2020

Identification of male heterogametic sex-determining regions on the Atlantic herring Clupea harengus genome.

Sunnvør Í Kongsstovu, Hans Atli Dahl, Hannes Gislason, Eydna Homrum, Jan Arge Jacobsen, Paul Flicek, Svein-Ole Mikalsen

Open access · hybridAbstract read
In one paragraph

Article in Journal of fish biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Sunnvør Í KongsstovuAmplexa Genetics A/S, Tórshavn, Faroe Islands.ORCID https://orcid.org/0000-0001-6631-2347
Hans Atli DahlAmplexa Genetics A/S, Tórshavn, Faroe Islands.
Hannes GislasonFaculty of Science and Technology, University of the Faroe Islands, Tórshavn, Faroe Islands.
Eydna HomrumFaroe Marine Research Institute, Tórshavn, Faroe Islands.
Jan Arge JacobsenFaroe Marine Research Institute, Tórshavn, Faroe Islands.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.ORCID https://orcid.org/0000-0002-3897-7955
Svein-Ole MikalsenFaculty of Science and Technology, University of the Faroe Islands, Tórshavn, Faroe Islands.
University of the Faroe Islands · FOHavstovan · FOEuropean Bioinformatics Institute · GB

Funding

CSRD VA 1Faroese Pelagic OrganisationFisheries Research Fund of the Faroe Islands 13/00893Granskingarráðið 0442Innovationsfonden 5016-00181A&xxx200F
6 · The paper itself

Abstract

The sex determination system of Atlantic herring Clupea harengus L., a commercially important fish, was investigated. Low coverage whole-genome sequencing of 48 females and 55 males and a genome-wide association study revealed two regions on chromosomes 8 and 21 associated with sex. The genotyping data of the single nucleotide polymorphisms associated with sex showed that 99.4% of the available female genotypes were homozygous, whereas 68.6% of the available male genotypes were heterozygous. This is close to the theoretical expectation of homo/heterozygous distribution at low sequencing coverage when the males are factually heterozygous. This suggested a male heterogametic sex determination system in C. harengus, consistent with other species within the Clupeiformes group. There were 76 protein coding genes on the sex regions but none of these genes were previously reported master sex regulation genes, or obviously related to sex determination. However, many of these genes are expressed in testis or ovary in other species, but the exact genes controlling sex determination in C. harengus could not be identified.

Indexed as

AnimalsFemaleFishesGenomeGenome-Wide Association StudyMalePolymorphism, Single NucleotideSex Determination ProcessesAtlantic herringClupea harengusgenome-wide association studysex determination

Identifiers

PMID32293027
PMCPMC7115899
OpenAlexW3016157922

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.