Evidence map›Paper›PMID 32292411›Full record

ArticleFrontiers in plant science2020

Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia.

Nicholas Santantonio, Sikiru Adeniyi Atanda, Yoseph Beyene, Rajeev K Varshney, Michael Olsen, Elizabeth Jones, Manish Roorkiwal, Manje Gowda, Chellapilla Bharadwaj, Pooran M Gaur and 9 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  9. Sparse testing using genomic prediction improves selection for breeding targets in elite spring wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  10. Article
  11. Review
  12. The Breeding Information Management System (BIMS): an online resource for crop breeding.Database : the journal of biological databases and curation · 2021
    Article
  13. Beat the stress: breeding for climate resilience in maize for the tropical rainfed environments.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
  14. Review
  15. Article
  16. Maximizing efficiency of genomic selection in CIMMYT's tropical maize breeding program.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 5 countries.

Nicholas SantantonioSection of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States.
Sikiru Adeniyi AtandaSection of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States.
Yoseph BeyeneInternational Maize and Wheat Improvement Center (CIMMYT), Nairobi, Kenya.
Rajeev K VarshneyCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Michael OlsenInternational Maize and Wheat Improvement Center (CIMMYT), Nairobi, Kenya.
Elizabeth JonesGenomic Open-Source Breeding Informatics Initiative (GOBii) Project, Institute of Biotechnology, Cornell University, Ithaca, NY, United States.
Manish RoorkiwalCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Manje GowdaInternational Maize and Wheat Improvement Center (CIMMYT), Nairobi, Kenya.
Chellapilla BharadwajDivision of Genetics, Indian Agriculture Research Institute (ICAR), New Delhi, India.
Pooran M GaurResearch Program - Asia, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Xuecai ZhangInternational Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico.
Kate DreherInternational Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico.
Claudio Ayala-HernándezInternational Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico.
Jose CrossaInternational Maize and Wheat Improvement Center (CIMMYT), Texcoco, Mexico.
Paulino Pérez-RodríguezColegio de Postgraduados, Mexico, Mexico.
Abhishek RathoreCenter of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Star Yanxin GaoGenomic Open-Source Breeding Informatics Initiative (GOBii) Project, Institute of Biotechnology, Cornell University, Ithaca, NY, United States.
Susan McCouchSection of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States.
Kelly R RobbinsSection of Plant Breeding and Genetics, School of Integrative Plant Sciences, Cornell University, Ithaca, NY, United States.
Cornell University · USCentro Internacional de Mejoramiento de Maíz Y Trigo · MXInternational Crops Research Institute for the Semi-Arid Tropics · INInternational Maize and Wheat Improvement Center · KEColegio de Postgraduados · MXIndian Agricultural Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Much of the world's population growth will occur in regions where food insecurity is prevalent, with large increases in food demand projected in regions of Africa and South Asia. While improving food security in these regions will require a multi-faceted approach, improved performance of crop varieties in these regions will play a critical role. Current rates of genetic gain in breeding programs serving Africa and South Asia fall below rates achieved in other regions of the world. Given resource constraints, increased genetic gain in these regions cannot be achieved by simply expanding the size of breeding programs. New approaches to breeding are required. The Genomic Open-source Breeding informatics initiative (GOBii) and Excellence in Breeding Platform (EiB) are working with public sector breeding programs to build capacity, develop breeding strategies, and build breeding informatics capabilities to enable routine use of new technologies that can improve the efficiency of breeding programs and increase genetic gains. Simulations evaluating breeding strategies indicate cost-effective implementations of genomic selection (GS) are feasible using relatively small training sets, and proof-of-concept implementations have been validated in the International Maize and Wheat Improvement Center (CIMMYT) maize breeding program. Progress on GOBii, EiB, and implementation of GS in CIMMYT and International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) breeding programs are discussed, as well as strategies for routine implementation of GS in breeding programs serving Africa and South Asia.

Indexed as

breeding informaticsbreeding scheme optimizationgenomic predictiongenomic selectionplant breedingtrial design

Identifiers

PMID32292411
PMCPMC7119190
OpenAlexW3013010069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.