Evidence map›Paper›PMID 32291821›Full record

ArticleMolecular microbiology2020

Translation inhibition from a distance: The small RNA SgrS silences a ribosomal protein S1-dependent enhancer.

Muhammad S Azam, Carin K Vanderpool

Abstract read
In one paragraph

Article in Molecular microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
  6. The Small Non-coding RNAJournal of veterinary research · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Identification of Amyloidogenic Regions inInternational journal of molecular sciences · 2021
    Article
  13. Article
  14. Article
  15. The Small ToxicmBio · 2020
    Article
  16. Article
  17. Frontiers in microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Muhammad S AzamDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Carin K VanderpoolDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0002-2850-5532

Funding

Molecular Determinants of Regulatory Hierarchy for Bacterial Small RNAsR01GM092830 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI VANDERPOOL, CARIN K · 2010 to 2020
$2.8M
Small RNA Regulation in BacteriaR35GM139557 · NIGMS · UNIVERSITY OF MINNESOTA · PI Carin K Vanderpool · 2021 to 2026
$2.6M
Quantitative Imaging and Modeling of Regulation by Bacterial Small RNAR01GM112659 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI HA, TAEKJIP, LUTHEY-SCHULTEN, ZAIDA · 2015 to 2018
$1.1M
NIGMS NIH HHS R01 GM092830NIGMS NIH HHS R01 GM112659NIGMS NIH HHS R35 GM139557
6 · The paper itself

Abstract

Many bacterial small RNAs (sRNAs) efficiently inhibit translation of target mRNAs by forming a duplex that sequesters the Shine-Dalgarno (SD) sequence or start codon and prevents formation of the translation initiation complex. There are a growing number of examples of sRNA-mRNA binding interactions distant from the SD region, but how these mediate translational regulation remains unclear. Our previous work in Escherichia coli and Salmonella identified a mechanism of translational repression of manY mRNA by the sRNA SgrS through a binding interaction upstream of the manY SD. Here, we report that SgrS forms a duplex with a uridine-rich translation-enhancing element in the manY 5' untranslated region. Notably, we show that the enhancer is ribosome-dependent and that the small ribosomal subunit protein S1 interacts with the enhancer to promote translation of manY. In collaboration with the chaperone protein Hfq, SgrS interferes with the interaction between the translation enhancer and ribosomal protein S1 to repress translation of manY mRNA. Since bacterial translation is often modulated by enhancer-like elements upstream of the SD, sRNA-mediated enhancer silencing could be a common mode of gene regulation.

Indexed as

Enhancer Elements, GeneticPeptide Chain Initiation, Translational5' Untranslated RegionsBase PairingBinding SitesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialHost Factor 1 ProteinProtein BiosynthesisRibosomal ProteinsRibosomesRNA, BacterialRNA InterferenceRNA, Small Untranslated5' Untranslated RegionsEscherichia coli ProteinsHost Factor 1 ProteinRibosomal Proteinsribosomal protein S1RNA, BacterialRNA, Small UntranslatedSgrT protein, E coliHfqS1sRNAtranslation enhancer

Identifiers

PMID32291821
PMCPMC7502529

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.