Evidence map›Paper›PMID 32291332›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Evolutionary history of modern Samoans.

Daniel N Harris, Michael D Kessler, Amol C Shetty, Daniel E Weeks, Ryan L Minster, Sharon Browning, Ethan E Cochrane, Ranjan Deka, Nicola L Hawley, Muagututi'a Sefuiva Reupena and 5 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. A stop-gain variant inHGG advances · 2023
    Pooled it
  2. Article
  3. Structural Variant Imputation in Samoans Using a Population-Specific Reference Panel.medRxiv : the preprint server for health sciences · 2026
    Article
  4. Article
  5. Article
  6. Kava consumption and the rise of sociopolitical complexity in Oceania.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Variation in spatial population structure in thebioRxiv : the preprint server for biology · 2024
    Article
  12. Indication of mixed glucose and fatty acid use by inferred brown adipose tissue activity in Samoans.American journal of human biology : the official journal of the Human Biology Council · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Daniel N HarrisInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201.
Michael D KesslerInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201.
Amol C ShettyInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201.
Daniel E WeeksDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261.
Ryan L MinsterDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261.
Sharon BrowningDepartment of Biostatistics, University of Washington, Seattle, WA 98195.
Ethan E CochraneAnthropology, The University of Auckland, Auckland 1010, New Zealand.ORCID 0000-0001-9027-0634
Ranjan DekaDepartment of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267.
Nicola L HawleyDepartment of Epidemiology (Chronic Disease), Yale University School of Public Health, New Haven, CT 06520.
Muagututi'a Sefuiva ReupenaLutia i Puava ae Mapu i Fagalele, Apia, Samoa 663030.
Take NaseriMinistry of Health, Government of Samoa, Apia, Samoa 663030.
Trans-Omics for Precision Medicine (TOPMed) Consortium
TOPMed Population Genetics Working Group
Stephen T McGarveyInternational Health Institute, Department of Epidemiology, Brown University School of Public Health, Providence, RI 02912.
Timothy D O'ConnorInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201; timothydoconnor@gmail.com.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
Rare variants and NHLBI traits in deeply phenotyped cohortsR01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2014 to 2016
$8.9M
Integrated cellular, mouse and human research on a novel missense variant influencing adiposity in SamoansR01HL093093 · NHLBI · BROWN UNIVERSITY · PI MCGARVEY, STEPHEN T. · 2009 to 2019
$8.2M
Next Generation Association Studies of Adiposity in Samoans Enhanced by a Samoan-Specific Whole Genome Sequence Reference PanelR01HL133040 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Ryan Lee Minster · 2017 to 2026
$7.5M
Training Grant in Cancer BiologyT32CA154274 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI Toni M Antalis, CURT I CIVIN · 2011 to 2026
$6.8M
Improved gene mapping for whole genome dataR01HG005701 · NHGRI · UNIVERSITY OF WASHINGTON · PI BROWNING, BRIAN LEE · 2010 to 2024
$4.4M
Rapid Evolution of Genomic Architecture and Multi-omics TraitsR35HG010692 · NHGRI · UNIVERSITY OF MARYLAND BALTIMORE · PI O'CONNOR, TIMOTHY DAVID · 2019 to 2023
$2.3M
High-performance mixed model toolset for integrative omics analysis of big dataU01HL137181 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI O'CONNELL, JEFFREY R · 2017 to 2019
$1.8M
NCATS NIH HHS UL1 TR001863NCI NIH HHS T32 CA154274NHGRI NIH HHS R01 HG005701NHGRI NIH HHS R35 HG010692NHLBI NIH HHS HHSN268201100037CNHLBI NIH HHS HHSN268201500016CNHLBI NIH HHS R01 HL093093NHLBI NIH HHS R01 HL117626NHLBI NIH HHS R01 HL120393NHLBI NIH HHS R01 HL133040NHLBI NIH HHS U01 HL137181
6 · The paper itself

Abstract

Archaeological studies estimate the initial settlement of Samoa at 2,750 to 2,880 y ago and identify only limited settlement and human modification to the landscape until about 1,000 to 1,500 y ago. At this point, a complex history of migration is thought to have begun with the arrival of people sharing ancestry with Near Oceanic groups (i.e., Austronesian-speaking and Papuan-speaking groups), and was then followed by the arrival of non-Oceanic groups during European colonialism. However, the specifics of this peopling are not entirely clear from the archaeological and anthropological records, and is therefore a focus of continued debate. To shed additional light on the Samoan population history that this peopling reflects, we employ a population genetic approach to analyze 1,197 Samoan high-coverage whole genomes. We identify population splits between the major Samoan islands and detect asymmetrical gene flow to the capital city. We also find an extreme bottleneck until about 1,000 y ago, which is followed by distinct expansions across the islands and subsequent bottlenecks consistent with European colonization. These results provide for an increased understanding of Samoan population history and the dynamics that inform it, and also demonstrate how rapid demographic processes can shape modern genomes.

Indexed as

Biological EvolutionPacific Island PeopleArchaeologyDemographyHumansSamoaTime FactorsAustronesianfine-scale population structuregenetically understudied populationsOceaniarare variants

Identifiers

PMID32291332
PMCPMC7196816

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.