Evidence map›Paper›PMID 32287271›Full record

ArticlePLoS genetics2020

The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana.

Melody Nicolau, Nathalie Picault, Julie Descombin, Yasaman Jami-Alahmadi, Suhua Feng, Etienne Bucher, Steven E Jacobsen, Jean-Marc Deragon, James Wohlschlegel, Guillaume Moissiard

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Identification of a highly drought-resistantFrontiers in plant science · 2024
    Article
  7. Phased secondary small interfering RNAs inNAR genomics and bioinformatics · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Melody NicolauLGDP-UMR5096, CNRS, Perpignan, France.
Nathalie PicaultLGDP-UMR5096, CNRS, Perpignan, France.
Julie DescombinLGDP-UMR5096, CNRS, Perpignan, France.
Yasaman Jami-AlahmadiDepartment of Biological Chemistry, University of California at Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0001-8289-2222
Suhua FengDepartment of Molecular, Cell and Developmental Biology, University of California at Los Angeles, Los Angeles, California, United States of America.
Etienne BucherPlant Breeding and Genetic Resources, Agroscope, Nyon, Switzerland.ORCID 0000-0002-3114-3763
Steven E JacobsenDepartment of Molecular, Cell and Developmental Biology, University of California at Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0001-9483-138X
Jean-Marc DeragonLGDP-UMR5096, CNRS, Perpignan, France.
James WohlschlegelDepartment of Biological Chemistry, University of California at Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0003-3399-901X
Guillaume MoissiardLGDP-UMR5096, CNRS, Perpignan, France.ORCID 0000-0002-9532-6876
Centre National de la Recherche Scientifique · FRUniversity of California, Los Angeles · USAgroscope · CHHoward Hughes Medical Institute · US

Funding

Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Epigenetic gene regulation in ArabidopsisR35GM130272 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JACOBSEN, STEVEN E · 2019 to 2023
$1.6M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM089778NIGMS NIH HHS R35 GM130272
6 · The paper itself

Abstract

Transposable elements (TEs) are DNA repeats that must remain silenced to ensure cell integrity. Several epigenetic pathways including DNA methylation and histone modifications are involved in the silencing of TEs, and in the regulation of gene expression. In Arabidopsis thaliana, the TE-derived plant mobile domain (PMD) proteins have been involved in TE silencing, genome stability, and control of developmental processes. Using a forward genetic screen, we found that the PMD protein MAINTENANCE OF MERISTEMS (MAIN) acts synergistically and redundantly with DNA methylation to silence TEs. We found that MAIN and its close homolog MAIN-LIKE 1 (MAIL1) interact together, as well as with the phosphoprotein phosphatase (PPP) PP7-like (PP7L). Remarkably, main, mail1, pp7l single and mail1 pp7l double mutants display similar developmental phenotypes, and share common subsets of upregulated TEs and misregulated genes. Finally, phylogenetic analyses of PMD and PP7-type PPP domains among the Eudicot lineage suggest neo-association processes between the two protein domains to potentially generate new protein function. We propose that, through this interaction, the PMD and PPP domains may constitute a functional protein module required for the proper expression of a common set of genes, and for silencing of TEs.

Indexed as

Gene Expression Regulation, PlantGene SilencingArabidopsisArabidopsis ProteinsDNA MethylationDNA Transposable ElementsEpigenesis, GeneticHeterochromatinMutationNuclear ProteinsPhosphoprotein PhosphatasesProtein BindingProtein DomainsRepressor ProteinsArabidopsis ProteinsAT5G10900 protein, ArabidopsisDNA Transposable ElementsHeterochromatinMAIL1 protein, ArabidopsisMAIN protein, ArabidopsisNuclear ProteinsPhosphoprotein PhosphatasesRepressor Proteins

Identifiers

PMID32287271
PMCPMC7156037
OpenAlexW3015895302

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.