Evidence map›Paper›PMID 32286293›Full record

ArticleNature communications2020

CdbA is a DNA-binding protein and c-di-GMP receptor important for nucleoid organization and segregation in Myxococcus xanthus.

Dorota Skotnicka, Wieland Steinchen, Dobromir Szadkowski, Ian T Cadby, Andrew L Lovering, Gert Bange, Lotte Søgaard-Andersen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. ComFB, a widespread family of c-di-NMP receptor proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Milestones in the development ofJournal of bacteriology · 2025
    Review
  5. Article
  6. ComFB, a new widespread family of c-di-NMP receptor proteins.bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Elongation factor P modulatesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Dorota SkotnickaDepartment of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Str. 10, 35043, Marburg, Germany.
Wieland SteinchenCenter for Synthetic Microbiology, Hans-Meerwein Str. 6, 35043, Marburg, Germany.
Dobromir SzadkowskiDepartment of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Str. 10, 35043, Marburg, Germany.
Ian T CadbySchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0002-3135-6769
Andrew L LoveringSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0002-1856-7975
Gert BangeCenter for Synthetic Microbiology, Hans-Meerwein Str. 6, 35043, Marburg, Germany.
Lotte Søgaard-AndersenDepartment of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Str. 10, 35043, Marburg, Germany. sogaard@mpi-marburg.mpg.de.ORCID http://orcid.org/0000-0002-0674-0013
Max Planck Institute for Terrestrial Microbiology · DEPhilipps University of Marburg · DEUniversity of Birmingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclic di-GMP (c-di-GMP) is a second messenger that modulates multiple responses to environmental and cellular signals in bacteria. Here we identify CdbA, a DNA-binding protein of the ribbon-helix-helix family that binds c-di-GMP in Myxococcus xanthus. CdbA is essential for viability, and its depletion causes defects in chromosome organization and segregation leading to a block in cell division. The protein binds to the M. xanthus genome at multiple sites, with moderate sequence specificity; however, its depletion causes only modest changes in transcription. The interactions of CdbA with c-di-GMP and DNA appear to be mutually exclusive and residue substitutions in CdbA regions important for c-di-GMP binding abolish binding to both c-di-GMP and DNA, rendering these protein variants non-functional in vivo. We propose that CdbA acts as a nucleoid-associated protein that contributes to chromosome organization and is modulated by c-di-GMP, thus revealing a link between c-di-GMP signaling and chromosome biology.

Indexed as

Chromosome SegregationBacterial ProteinsBase SequenceCell NucleusChromosomes, BacterialCyclic GMPDNA, BacterialDNA-Binding ProteinsGenetic LociModels, MolecularMyxococcus xanthusProtein MultimerizationProtein Structure, SecondaryTranscription, GeneticBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPDNA, BacterialDNA-Binding Proteins

Identifiers

PMID32286293
PMCPMC7156744
OpenAlexW3015786569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.