Evidence map›Paper›PMID 32286284›Full record

ArticleNature communications2020

Structural dynamics in proteins induced by and probed with X-ray free-electron laser pulses.

Karol Nass, Alexander Gorel, Malik M Abdullah, Andrew V Martin, Marco Kloos, Agostino Marinelli, Andrew Aquila, Thomas R M Barends, Franz-Josef Decker, R Bruce Doak and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 96 citations in OpenAlex.

  1. Radiation damage in serial femtosecond crystallography studied in hemoglobin.Acta crystallographica. Section D, Structural biology · 2026
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  17. A snapshot love story: what serial crystallography has done and will do for us.Acta crystallographica. Section D, Structural biology · 2024
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 4 countries.

Karol Nass *Max-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-8843-1566
Alexander Gorel *Max-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-3376-670X
Malik M AbdullahCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0003-0575-4533
Andrew V MartinSchool of Science, RMIT University, 124 La Trobe Street, Melbourne, VIC, 3000, Australia.
Marco KloosMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.
Agostino MarinelliSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.ORCID http://orcid.org/0000-0002-7248-4652
Andrew AquilaSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.
Thomas R M BarendsMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9488-3005
Franz-Josef DeckerSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.
R Bruce DoakMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.
Lutz FoucarMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.
Elisabeth HartmannMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.
Mario HilpertMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-2304-2070
Mark S HunterSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.
Zoltan JurekCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.
Jason E KoglinSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.
Alexander KozlovARC Centre of Excellence for Advanced Molecular Imaging, School of Physics, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Alberto A LutmanSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.ORCID http://orcid.org/0000-0001-5791-9198
Gabriela Nass KovacsMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.
Christopher M RoomeMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.
Robert L ShoemanMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-1030-6738
Robin SantraCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-1442-9815
Harry M QuineyARC Centre of Excellence for Advanced Molecular Imaging, School of Physics, The University of Melbourne, Melbourne, VIC, 3010, Australia. beata.ziaja-motyka@cfel.de.
Beata ZiajaCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany. quiney@unimelb.edu.au.
Sébastien BoutetSLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA.ORCID http://orcid.org/0000-0003-3928-1244
Ilme SchlichtingMax-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120, Heidelberg, Germany. ilme.schlichting@mpimf-heidelberg.mpg.de.ORCID http://orcid.org/0000-0002-0936-7496
Max Planck Institute for Medical Research · DESLAC National Accelerator Laboratory · USUniversität Hamburg · DEThe University of Melbourne · AURMIT University · AU

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NCRR NIH HHS P41 RR001209NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

X-ray free-electron lasers (XFELs) enable crystallographic structure determination beyond the limitations imposed upon synchrotron measurements by radiation damage. The need for very short XFEL pulses is relieved through gating of Bragg diffraction by loss of crystalline order as damage progresses, but not if ionization events are spatially non-uniform due to underlying elemental distributions, as in biological samples. Indeed, correlated movements of iron and sulfur ions were observed in XFEL-irradiated ferredoxin microcrystals using unusually long pulses of 80 fs. Here, we report a femtosecond time-resolved X-ray pump/X-ray probe experiment on protein nanocrystals. We observe changes in the protein backbone and aromatic residues as well as disulfide bridges. Simulations show that the latter's correlated structural dynamics are much slower than expected for the predicted high atomic charge states due to significant impact of ion caging and plasma electron screening. This indicates that dense-environment effects can strongly affect local radiation damage-induced structural dynamics.

Indexed as

ElectronsLasersBacterial ProteinsDisulfidesSulfurX-RaysBacterial ProteinsDisulfidesSulfur

Identifiers

PMID32286284
PMCPMC7156470
OpenAlexW3016123816

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.