Evidence map›Paper›PMID 32286226›Full record

ArticleeLife2020

Cryo-EM structure in situ reveals a molecular switch that safeguards virus against genome loss.

Oliver W Bayfield, Alasdair C Steven, Alfred A Antson

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Viral Genomic DNA Packaging Machinery.Sub-cellular biochemistry · 2024
    Review
  7. Article
  8. Article
  9. Article
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  13. Review
  14. Structural changes in bacteriophage T7 upon receptor-induced genome ejection.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Oliver W BayfieldYork Structural Biology Laboratory, Department of Chemistry, University of York, York, United Kingdom.ORCID 0000-0003-1421-7780
Alasdair C StevenLaboratory of Structural Biology Research, National Institute of Arthritis Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, United States.
Alfred A AntsonYork Structural Biology Laboratory, Department of Chemistry, University of York, York, United Kingdom.ORCID 0000-0002-4533-3816
National Institutes of Health · USUniversity of York · GB

Funding

NIH HHS 103460Wellcome Trust 103460Wellcome Trust 206377Wellcome Trust 206377/Z/17/Z
6 · The paper itself

Abstract

The portal protein is a key component of many double-stranded DNA viruses, governing capsid assembly and genome packaging. Twelve subunits of the portal protein define a tunnel, through which DNA is translocated into the capsid. It is unknown how the portal protein functions as a gatekeeper, preventing DNA slippage, whilst allowing its passage into the capsid, and how these processes are controlled. A cryo-EM structure of the portal protein of thermostable virus P23-45, determined in situ in its procapsid-bound state, indicates a mechanism that naturally safeguards the virus against genome loss. This occurs via an inversion of the conformation of the loops that define the constriction in the central tunnel, accompanied by a hydrophilic-hydrophobic switch. The structure also shows how translocation of DNA into the capsid could be modulated by a changing mode of protein-protein interactions between portal and capsid, across a symmetry-mismatched interface.

Indexed as

Models, MolecularAnimalsCapsid ProteinsCryoelectron MicroscopyGenome, ViralHumansProtein ConformationThermus thermophilusVirus AssemblyCapsid Proteinsbacteriophagecryo-EMDNA packagingmolecular biophysicsportal proteinstructural biologysymmetry mismatchvirusvirus assembly

Identifiers

PMID32286226
PMCPMC7234808
OpenAlexW3016070378

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.