Evidence map›Paper›PMID 32284973›Full record

ArticleScience advances2020

Role of allosteric switches and adaptor domains in long-distance cross-talk and transient tunnel formation.

Nandini Sharma, Navjeet Ahalawat, Padmani Sandhu, Erick Strauss, Jagannath Mondal, Ruchi Anand

Abstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. A high throughput assay for phosphoribosylformylglycinamidine synthase.SLAS discovery : advancing life sciences R & D · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Human de novo purine biosynthesis.Critical reviews in biochemistry and molecular biology · 2021
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nandini SharmaDepartment of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.ORCID 0000-0003-4053-2186
Navjeet AhalawatCenter for Interdisciplinary Science, Tata Institute of Fundamental Research, Hyderabad 500107, India.ORCID 0000-0002-9665-8709
Padmani SandhuDepartment of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
Erick StraussDepartment of Biochemistry, Stellenbosch University, Stellenbosch 7602, South Africa.ORCID 0000-0002-9898-8226
Jagannath MondalCenter for Interdisciplinary Science, Tata Institute of Fundamental Research, Hyderabad 500107, India.
Ruchi AnandDepartment of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.ORCID 0000-0002-2045-3758

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transient tunnels that assemble and disassemble to facilitate passage of unstable intermediates in enzymes containing multiple reaction centers are controlled by allosteric cues. Using the 140-kDa purine biosynthetic enzyme PurL as a model system and a combination of biochemical and x-ray crystallographic studies, we show that long-distance communication between ~25-Å distal active sites is initiated by an allosteric switch, residing in a conserved catalytic loop, adjacent to the synthetase active site. Further, combinatory experiments seeded from molecular dynamics simulations help to delineate transient states that bring out the central role of nonfunctional adaptor domains. We show that carefully orchestrated conformational changes, facilitated by interplay of dynamic interactions at the allosteric switch and adaptor-domain interface, control reactivity and concomitant formation of the ammonia tunnel. This study asserts that substrate channeling is modulated by allosteric hotspots that alter protein energy landscape, thereby allowing the protein to adopt transient conformations paramount to function.

Indexed as

Molecular Docking SimulationMolecular Dynamics SimulationProtein ConformationProtein Interaction Domains and MotifsAllosteric RegulationAmmoniaBinding SitesCarbon-Nitrogen Ligases with Glutamine as Amide-N-DonorCatalysisMutationProtein BindingProteinsAmmoniaCarbon-Nitrogen Ligases with Glutamine as Amide-N-DonorProteins

Identifiers

PMID32284973
PMCPMC7124931

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.