Evidence map›Paper›PMID 32284601›Full record

ArticleNature chemical biology2020

Short disordered protein segment regulates cross-species transmission of a yeast prion.

Toshinobu Shida, Yuji O Kamatari, Takao Yoda, Yoshiki Yamaguchi, Michael Feig, Yumiko Ohhashi, Yuji Sugita, Kazuo Kuwata, Motomasa Tanaka

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Exposed Hsp70-binding site impacts yeast Sup35 prion disaggregation and propagation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Amyloid particles facilitate surface-catalyzed cross-seeding by acting as promiscuous nanoparticles.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Tau strains shape disease.Acta neuropathologica · 2021
    Review
  5. Article
  6. Article
  7. Prion Amyloid Polymorphs - The Tag Might Change It All.Frontiers in molecular biosciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Toshinobu ShidaDepartment of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Japan.
Yuji O Kamatari *Life Science Research Center, Gifu University, Gifu, Japan.
Takao Yoda *Nagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Yoshiki YamaguchiFaculty of Pharmaceutical Sciences, Tohoku Medical and Pharmaceutical University, Sendai, Japan.
Michael FeigDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA.
Yumiko OhhashiGraduate School of Science, Kobe University, Kobe, Japan.
Yuji SugitaComputational Biophysics Research Team, RIKEN Research Center for Computational Science, Kobe, Japan.ORCID http://orcid.org/0000-0001-9738-9216
Kazuo KuwataUnited Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu, Japan.ORCID http://orcid.org/0000-0002-7971-2355
Motomasa TanakaDepartment of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Japan. motomasa.tanaka@riken.jp.ORCID http://orcid.org/0000-0002-2994-7703
Gifu University · JPRIKEN Center for Biosystems Dynamics Research · JPTokyo Institute of Technology · JPNagahama Institute of Bio-Science and Technology · JPRIKEN · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soluble prion proteins contingently encounter foreign prion aggregates, leading to cross-species prion transmission. However, how its efficiency is regulated by structural fluctuation of the host soluble prion protein remains unsolved. In the present study, through the use of two distantly related yeast prion Sup35 proteins, we found that a specific conformation of a short disordered segment governs interspecies prion transmissibility. Using a multidisciplinary approach including high-resolution NMR and molecular dynamics simulation, we identified critical residues within this segment that allow interspecies prion transmission in vitro and in vivo, by locally altering dynamics and conformation of soluble prion proteins. Remarkably, subtle conformational differences caused by a methylene group between asparagine and glutamine sufficed to change the short segment structure and substantially modulate the cross-seeding activity. Thus, our findings uncover how conformational dynamics of the short segment in the host prion protein impacts cross-species prion transmission. More broadly, our study provides mechanistic insights into cross-seeding between heterologous proteins.

Indexed as

Amino Acid SequenceAsparagineCloning, MolecularEscherichia coliGene ExpressionGenetic VectorsGlutamineIntrinsically Disordered ProteinsMolecular Dynamics SimulationPeptide Termination FactorsPrionsProtein Interaction Domains and MotifsProtein IsoformsProtein Structure, SecondaryRecombinant ProteinsSaccharomyces cerevisiaeAsparagineGlutamineIntrinsically Disordered ProteinsPeptide Termination FactorsPrionsProtein IsoformsRecombinant ProteinsSaccharomyces cerevisiae ProteinsSUP35 protein, S cerevisiae

Identifiers

PMID32284601
OpenAlexW3015399467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.