Evidence map›Paper›PMID 32283996›Full record

ReviewAnnual review of neuroscience2020

Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics.

Adam S Charles, Benjamin Falk, Nicholas Turner, Talmo D Pereira, Daniel Tward, Benjamin D Pedigo, Jaewon Chung, Randal Burns, Satrajit S Ghosh, Justus M Kebschull and 2 more

Abstract readReview
In one paragraph

Review in Annual review of neuroscience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Two-photon calcium imaging of neuronal activity.Nature reviews. Methods primers · 2022
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Adam S CharlesDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
Benjamin FalkDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
Nicholas TurnerDepartment of Computer Science, Princeton University, Princeton, New Jersey 08540, USA.
Talmo D PereiraPrinceton Neuroscience Institute, Princeton University, Princeton, New Jersey 08540, USA.
Daniel TwardDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
Benjamin D PedigoDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
Jaewon ChungDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
Randal BurnsDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
Satrajit S GhoshMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Justus M KebschullDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.
William SilversmithPrinceton Neuroscience Institute, Princeton University, Princeton, New Jersey 08540, USA.
Joshua T VogelsteinDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; email: adamsc@jhu.edu.

Funding

Subcortical Neural Coding and DynamicsU19NS104648 · NINDS · PRINCETON UNIVERSITY · PI BRODY, CARLOS D · 2017 to 2021
$15.3M
Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2M
Collaboratory for atlasing cell type anatomy in the female and male mouse brainU01MH114824 · NIMH · COLD SPRING HARBOR LABORATORY · PI MITRA, PARTHA PRATIM · 2017 to 2021
$11.7M
DANDI: Distributed Archives for Neurophysiology Data IntegrationR24MH117295 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Satrajit Sujit Ghosh, Yaroslav O Halchenko · 2019 to 2026
$11.6M
BIOMEDICAL ENGINEERING TRAINING PROGRAMT32GM007057 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI KANOLD, PATRICK O, KARCHIN, RACHEL · 1985 to 2023
$10.4M
Towards integrated 3D reconstruction of whole human brains at subcellular resolutionU01MH117072 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CHUNG, KWANGHUN · 2018 to 2022
$8.8M
Circuit Mechanisms Underlying Persistent Activity in a Neural IntegratorR01EY027036 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Emre R Aksay, MARK S GOLDMAN · 2016 to 2026
$6.4M
Circuit Mechanisms Underlying Learned Changes in Persistent Neural ActivityR01NS104926 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI AKSAY, EMRE R, GOLDMAN, MARK S · 2018 to 2022
$4.1M
Crowdsourcing the Fly ConnectomeRF1MH117815 · NIMH · PRINCETON UNIVERSITY · PI MURTHY, MALA, SEUNG, HYUNJUNE SEBASTIAN · 2018 to 2018
$3.3M
NeuroScout: A cloud-based platform for flexible re-analysis of naturalistic fMRI datasetsR01MH109682 · NIMH · UNIVERSITY OF TEXAS AT AUSTIN · PI DE LA VEGA, ALEJANDRO · 2016 to 2020
$3.0M
Nipype: Dataflows for Reproducible Biomedical ResearchR01EB020740 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GHOSH, SATRAJIT SUJIT · 2016 to 2019
$2.7M
NEI NIH HHS R01 EY027036NIBIB NIH HHS P41 EB019936NIBIB NIH HHS R01 EB020740NIGMS NIH HHS T32 GM007057NIMH NIH HHS R01 MH109682NIMH NIH HHS R24 MH117295NIMH NIH HHS RF1 MH117815NIMH NIH HHS U01 MH114824NIMH NIH HHS U01 MH117072NINDS NIH HHS R01 NS104926NINDS NIH HHS U19 NS104648
6 · The paper itself

Abstract

As acquiring bigger data becomes easier in experimental brain science, computational and statistical brain science must achieve similar advances to fully capitalize on these data. Tackling these problems will benefit from a more explicit and concerted effort to work together. Specifically, brain science can be further democratized by harnessing the power of community-driven tools, which both are built by and benefit from many different people with different backgrounds and expertise. This perspective can be applied across modalities and scales and enables collaborations across previously siloed communities.

Indexed as

Big DataComputational BiologyAnimalsBrainDatabases, GeneticGene ExpressionHumansNerve Netcomputationalinfrastructurereference datastatistics

Identifiers

PMID32283996
PMCPMC9119703

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.