Evidence map›Paper›PMID 32283555›Full record

ArticleDatabase : the journal of biological databases and curation2020

A structured model for immune exposures.

Randi Vita, James A Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H Kleinstein, Alessandro Sette, Bjoern Peters

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Randi VitaDivision for Vaccine Discovery, 9420 Athena Circle La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA.
James A OvertonKnocean Inc., 2 - 107 Quebec Ave Toronto M6P 2T3, Ontario, Canada.
Patrick DunnImmPort Curation Team, NG Health Solutions, 2101 Gaither Road Rockville, MD 20850, USA.
Kei-Hoi Cheung464 Congress Ave Department of Emergency Medicine, Yale University, New Haven, CT, 06519 USA.
Steven H KleinsteinInterdepartmental Program in Computational Biology and Bioinformatics, Yale University, 464 Congress Ave New Haven, CT, 06519 USA.
Alessandro SetteDivision for Vaccine Discovery, 9420 Athena Circle La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA.
Bjoern PetersDivision for Vaccine Discovery, 9420 Athena Circle La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA.

Funding

Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Alessandro Sette · 2015 to 2026
$36.7M
IMMUNE EPITOPE AND ANALYSIS PROGRAM: Transplantation of organs, tissues and cells 75N93019C00001 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SETTE, ALESSANDRO · 2019 to 2025
$23.1M
Services to support the OBO foundry standardsR24HG010032 · NHGRI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI MUNGALL, CHRISTOPHER J, PETERS, BJOERN · 2017 to 2019
$1.4M
NHGRI NIH HHS R24 HG010032NIAID NIH HHS 75N93019C00001NIAID NIH HHS HHSN272201200010CNIAID NIH HHS U19 AI118626
6 · The paper itself

Abstract

An Immune Exposure is the process by which components of the immune system first encounter a potential trigger. The ability to describe consistently the details of the Immune Exposure process was needed for data resources responsible for housing scientific data related to the immune response. This need was met through the development of a structured model for Immune Exposures. This model was created during curation of the immunology literature, resulting in a robust model capable of meeting the requirements of such data. We present this model with the hope that overlapping projects will adopt and or contribute to this work.

Indexed as

Databases, FactualAntibodiesAntigensBiological OntologiesComputational BiologyData CurationEpitopesHumansImmune SystemImmune System DiseasesAntibodiesAntigensEpitopes

Identifiers

PMID32283555
PMCPMC7153954

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.