Evidence map›Paper›PMID 32282989›Full record

ArticleMolecular informatics2020

From SAR Diagnostics to Compound Design: Development Chronology of the Compound Optimization Monitor (COMO) Method.

Dimitar Yonchev, Martin Vogt, Jürgen Bajorath

Abstract read
In one paragraph

Article in Molecular informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Dimitar YonchevDepartment of Life Science Informatics Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universität Bonn, Endenicher Allee 19c, D-53115, Bonn, Germany.
Martin VogtDepartment of Life Science Informatics Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universität Bonn, Endenicher Allee 19c, D-53115, Bonn, Germany.
Jürgen BajorathDepartment of Life Science Informatics Bonn-Aachen International Center for Information Technology, Rheinische Friedrich-Wilhelms-Universität Bonn, Endenicher Allee 19c, D-53115, Bonn, Germany.ORCID 0000-0002-0557-5714

Funding

Chemical Computing GroupJürgen Manchot StiftungOpenEye Scientific Software
6 · The paper itself

Abstract

In medicinal chemistry, compound optimization largely depends on chemical knowledge, experience, and intuition, and progress in hit-to-lead and lead optimization projects is difficult to estimate. Accordingly, approaches are sought after that aid in assessing the odds of success with an optimization project and making decisions whether to continue or discontinue work on an analog series at a given stage. However, currently there are only very few approaches available that are capable of providing decision support. We introduce a computational methodology designed to combine the assessment of chemical saturation of analog series and structure-activity relationship (SAR) progression. The current endpoint of these development efforts, the compound optimization monitor (COMO), further extends lead optimization diagnostics to compound design and activity prediction. Hence, COMO plays dual role in supporting lead optimization campaigns.

Indexed as

AlgorithmsDrug DesignStructure-Activity Relationshipactivity predictionanalog designanalog serieschemical saturationchemical spacecompound neighborhoodsoptimizationSAR progressionstructure-activity relationships (SARs)virtual analogs

Identifiers

PMID32282989
PMCPMC7816267

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.