Evidence map›Paper›PMID 32282858›Full record

ArticlePLoS genetics2020

A missense variant in Mitochondrial Amidoxime Reducing Component 1 gene and protection against liver disease.

Connor A Emdin, Mary E Haas, Amit V Khera, Krishna Aragam, Mark Chaffin, Derek Klarin, George Hindy, Lan Jiang, Wei-Qi Wei, Qiping Feng and 32 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 103 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed, 4 pooled it
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 4 syntheses or guidelines pooled it, 154 citations in OpenAlex.

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  16. Association of Genetic Variants inInternational journal of molecular sciences · 2026
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43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors at 16 institutions in 8 countries.

Connor A EmdinCenter for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0003-2337-1229
Mary E HaasCenter for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0002-2816-9268
Amit V KheraCenter for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0001-6535-5839
Krishna AragamCenter for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America.
Mark ChaffinProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-1234-5562
Derek KlarinProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-4636-5780
George HindyProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.
Lan JiangDepartments of Biomedical Informatics, Vanderbilt University, Vanderbilt, Tennessee, United States of America.ORCID 0000-0002-2583-3661
Wei-Qi WeiDepartments of Biomedical Informatics, Vanderbilt University, Vanderbilt, Tennessee, United States of America.ORCID 0000-0003-4985-056X
Qiping FengDepartments of Medicine, Vanderbilt University, Vanderbilt, Tennessee, United States of America.ORCID 0000-0002-6213-793X
Juha KarjalainenProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.
Aki HavulinnaInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, FI, Helsinki, Finland.ORCID 0000-0002-4787-8959
Tuomo KiiskinenInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, FI, Helsinki, Finland.ORCID 0000-0002-6306-8227
Alexander BickProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-5824-9595
Diego ArdissinoDivision of Cardiology, Azienda Ospedaliero-Universitaria di Parma, Parma, Italy.ORCID 0000-0003-0410-3528
James G WilsonDepartment of Physiology and Biophysics, University of Mississippi Medical Center, Jackson, Mississippi, United States of America.
Heribert SchunkertDeutsches Herzzentrum München, Technische Universität München, Deutsches Zentrum für Herz-Kreislauf-Forschung, München, Germany.ORCID 0000-0001-6428-3001
Ruth McPhersonUniversity of Ottawa Heart Institute, Ottawa, Ontario, Canada.ORCID 0000-0002-9087-6107
Hugh WatkinsDivision of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, United Kingdom.
Roberto ElosuaCardiovascular Epidemiology and Genetics, Hospital del Mar Research Institute, Barcelona, Spain.
Matthew J BownDepartment of Cardiovascular Sciences, University of Leicester, and NIHR Leicester Biomedical Research Centre, Leicester, United Kingdom.
Nilesh J SamaniDepartment of Cardiovascular Sciences, University of Leicester, and NIHR Leicester Biomedical Research Centre, Leicester, United Kingdom.
Usman BaberThe Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
Jeanette ErdmannInstitute for Cardiogenetics, University of Lübeck, Lübeck, Germany.ORCID 0000-0002-4486-6231
Namrata GuptaProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.
John DaneshCardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Cambridge, United Kingdom.
Danish SaleheenDepartment of Biostatistics and Epidemiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Kyong-Mi ChangPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0001-6811-9364
Marijana VujkovicPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0003-4924-5714
Ben VoightPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-6205-9994
Scott DamrauerPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0001-8009-1632
Julie LynchPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0003-0108-2127
David KaplanPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-3839-336X
Marina SerperPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0003-4899-2160
Philip TsaoVeterans Affairs Palo Alto Health Care System, Palo Alto, California, United States of America.ORCID 0000-0001-7274-9318
Million Veteran Program
Josep MercaderCenter for Genomic Medicine, Massachusetts General Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0001-8494-3660
Craig HanisHuman Genetics Center, School of Public Health, The University of Texas Health Science Center at Houston, Houston, Texas, United States of America.ORCID 0000-0002-4880-5348
Mark DalyInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, FI, Helsinki, Finland.
Joshua DennyDepartments of Biomedical Informatics, Vanderbilt University, Vanderbilt, Tennessee, United States of America.ORCID 0000-0002-3049-7332
Stacey GabrielProgram in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.
Sekar KathiresanDepartment of Medicine, Harvard Medical School, Boston, Massachusetts, United States of America.
Broad Institute · USUniversity of Pennsylvania · USUniversity of Helsinki · FIVanderbilt University · USGerman Centre for Cardiovascular Research · DEUniversity of Leicester · GBCardiovascular Institute of the South · USCenter for Non-Communicable Diseases · PKCentre for Human Genetics · GBHarvard University · USJackson Memorial Hospital · USOspedale di Parma · ITUniversitat de Vic - Universitat Central de Catalunya · ESUniversity of Cambridge · GBUniversity of Ottawa · CAVA Palo Alto Health Care System · US

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Center for Common Disease GeneticsUM1HG008895 · NHGRI · BROAD INSTITUTE, INC. · PI DALY, MARK JOSEPH, GABRIEL, STACEY · 2016 to 2020
$111.2M
Tracking and Evaluation CoreU54GM115428 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI HALL, JOHN E · 2016 to 2025
$38.2M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsRC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2009 to 2009
$10.2M
Using genetic variation to study biology of blood lipids & coronary heart diseaseR01HL127564 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Pradeep Natarajan, Gina Marie Peloso · 2015 to 2026
$7.3M
Algorithms to identify non-coding mutational burden and disease-relevant pathwaysR01DK101478 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI VOIGHT, BENJAMIN FRANKLIN · 2014 to 2018
$2.9M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
Polygenic prediction of common, complex diseasesK08HG010155 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI KHERA, AMIT VIKRAM · 2018 to 2021
$1.1M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsRC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2009 to 2009
$817k
Algorithms to identify non-coding mutational burden and disease-relevant pathwaysR56DK101478 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI VOIGHT, BENJAMIN FRANKLIN · 2019 to 2019
$272k
British Heart Foundation CS/14/2/30841British Heart Foundation RG/18/10/33842British Heart Foundation RG2000010Department of Health IS_BRU_0211_20033NHGRI NIH HHS K08 HG010155NHGRI NIH HHS U54 HG003067NHGRI NIH HHS UM1 HG008895NHLBI NIH HHS HHSN268201300046CNHLBI NIH HHS HHSN268201300047CNHLBI NIH HHS HHSN268201300048CNHLBI NIH HHS HHSN268201300049CNHLBI NIH HHS HHSN268201300050CNHLBI NIH HHS R01 HL127564NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102925NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NIDDK NIH HHS R01 DK101478NIDDK NIH HHS R56 DK101478NIGMS NIH HHS U54 GM115428
6 · The paper itself

Abstract

Analyzing 12,361 all-cause cirrhosis cases and 790,095 controls from eight cohorts, we identify a common missense variant in the Mitochondrial Amidoxime Reducing Component 1 gene (MARC1 p.A165T) that associates with protection from all-cause cirrhosis (OR 0.91, p = 2.3*10-11). This same variant also associates with lower levels of hepatic fat on computed tomographic imaging and lower odds of physician-diagnosed fatty liver as well as lower blood levels of alanine transaminase (-0.025 SD, 3.7*10-43), alkaline phosphatase (-0.025 SD, 1.2*10-37), total cholesterol (-0.030 SD, p = 1.9*10-36) and LDL cholesterol (-0.027 SD, p = 5.1*10-30) levels. We identified a series of additional MARC1 alleles (low-frequency missense p.M187K and rare protein-truncating p.R200Ter) that also associated with lower cholesterol levels, liver enzyme levels and reduced risk of cirrhosis (0 cirrhosis cases for 238 R200Ter carriers versus 17,046 cases of cirrhosis among 759,027 non-carriers, p = 0.04) suggesting that deficiency of the MARC1 enzyme may lower blood cholesterol levels and protect against cirrhosis.

Indexed as

Genetic Predisposition to DiseaseAllelesCholesterol, LDLCoronary Artery DiseaseDatasets as TopicFatty LiverFemaleHomozygoteHumansLiverLiver CirrhosisLiver Cirrhosis, AlcoholicLoss of Function MutationMaleMiddle AgedMitochondrial ProteinsCholesterol, LDLMitochondrial ProteinsMTARC1 protein, humanOxidoreductases

Identifiers

PMID32282858
PMCPMC7200007
OpenAlexW3016050178

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.