Evidence map›Paper›PMID 32282821›Full record

ArticlePLoS genetics2020

The transcription and export complex THO/TREX contributes to transcription termination in plants.

Ghazanfar Abbas Khan, Jules Deforges, Rodrigo S Reis, Yi-Fang Hsieh, Jonatan Montpetit, Wojciech Antosz, Luca Santuari, Christian S Hardtke, Klaus D Grasser, Yves Poirier

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The Great Escape: mRNA Export through the Nuclear Pore Complex.International journal of molecular sciences · 2021
    Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Ghazanfar Abbas KhanDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0001-5629-0682
Jules DeforgesDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Rodrigo S ReisDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-3673-014X
Yi-Fang HsiehDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Jonatan MontpetitDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0001-5347-2974
Wojciech AntoszDepartment of Cell Biology & Plant Biochemistry, Biochemistry Centre, University of Regensburg, Regensburg, Germany.
Luca SantuariDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0001-8784-2507
Christian S HardtkeDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Klaus D GrasserDepartment of Cell Biology & Plant Biochemistry, Biochemistry Centre, University of Regensburg, Regensburg, Germany.ORCID 0000-0002-7080-5520
Yves PoirierDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0001-8660-294X
University of Lausanne · CHUniversity of Regensburg · DEThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription termination has important regulatory functions, impacting mRNA stability, localization and translation potential. Failure to appropriately terminate transcription can also lead to read-through transcription and the synthesis of antisense RNAs which can have profound impact on gene expression. The Transcription-Export (THO/TREX) protein complex plays an important role in coupling transcription with splicing and export of mRNA. However, little is known about the role of the THO/TREX complex in the control of transcription termination. In this work, we show that two proteins of the THO/TREX complex, namely TREX COMPONENT 1 (TEX1 or THO3) and HYPER RECOMBINATION1 (HPR1 or THO1) contribute to the correct transcription termination at several loci in Arabidopsis thaliana. We first demonstrate this by showing defective termination in tex1 and hpr1 mutants at the nopaline synthase (NOS) terminator present in a T-DNA inserted between exon 1 and 3 of the PHO1 locus in the pho1-7 mutant. Read-through transcription beyond the NOS terminator and splicing-out of the T-DNA resulted in the generation of a near full-length PHO1 mRNA (minus exon 2) in the tex1 pho1-7 and hpr1 pho1-7 double mutants, with enhanced production of a truncated PHO1 protein that retained phosphate export activity. Consequently, the strong reduction of shoot growth associated with the severe phosphate deficiency of the pho1-7 mutant was alleviated in the tex1 pho1-7 and hpr1 pho1-7 double mutants. Additionally, we show that RNA termination defects in tex1 and hpr1 mutants leads to 3'UTR extensions in several endogenous genes. These results demonstrate that THO/TREX complex contributes to the regulation of transcription termination.

Indexed as

Transcription Termination, GeneticAmino Acid OxidoreductasesArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantAmino Acid OxidoreductasesArabidopsis ProteinsEMU protein, Arabidopsisnopaline synthasePHO1 protein, ArabidopsisTEX1 protein, Arabidopsis

Identifiers

PMID32282821
PMCPMC7179932
OpenAlexW3015582131

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.