Evidence map›Paper›PMID 32281388›Full record

ArticleAIDS research and human retroviruses2020

New Genomes from the Congo Basin Expand History of CRF01_AE Origin and Dissemination.

Dennis Maletich Junqueira, Eduan Wilkinson, Ana Vallari, Xianding Deng, Asmeeta Achari, Guixia Yu, Carole McArthur, Lazare Kaptue, Dora Mbanya, Charles Chiu and 3 more

Open access · hybridAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 4 countries.

Dennis Maletich JunqueiraCentro Universitário Ritter dos Reis-UniRitter, Porto Alegre, Brazil.
Eduan WilkinsonKwaZulu-Natal Research Innovation Sequencing Platform (KRISP), University of KwaZulu-Natal, Durban, Republic of South Africa.
Ana VallariAbbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, USA.
Xianding DengDepartment of Laboratory Medicine, University of California, San Francisco, California, USA.
Asmeeta AchariDepartment of Laboratory Medicine, University of California, San Francisco, California, USA.
Guixia YuDepartment of Laboratory Medicine, University of California, San Francisco, California, USA.
Carole McArthurSchool of Dentistry and School of Medicine, University of Missouri-Kansas City, Kansas City, Missouri, USA.
Lazare KaptueUniversité des Montagnes, Bangangté, Cameroon.
Dora MbanyaUniversité de Yaoundé I, Yaoundé, Cameroon.
Charles ChiuDepartment of Laboratory Medicine, University of California, San Francisco, California, USA.
Gavin A ClohertyAbbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, USA.
Tulio de OliveiraKwaZulu-Natal Research Innovation Sequencing Platform (KRISP), University of KwaZulu-Natal, Durban, Republic of South Africa.
Mary A RodgersAbbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, USA.
Abbott (United States) · USUniversity of KwaZulu-Natal · ZAAbbott Fund · USGlobal Viral · USUniversité des Montagnes · CMUniversity College London · GBUniversity of Bamenda · CMUniversity of California, San Francisco · USUniversity of Missouri–Kansas City · US

Funding

Pan-Genomic Approaches for Comprehensive Blood Screening of Novel or Emerging Infectious AgentsR01HL105704 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHIU, CHARLES YEN · 2011 to 2020
$5.9M
Identification of diagnostic and prognostic host biomarkers of Zika virus infection by transcriptome profilingR21AI129455 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHIU, CHARLES YEN · 2017 to 2018
$436k
NHLBI NIH HHS R01 HL105704NIAID NIH HHS R21 AI129455
6 · The paper itself

Abstract

Although the first HIV circulating recombinant form (CRF01_AE) is the predominant strain in many Asian countries, it is uncommonly found in the Congo Basin from where it first originated. To fill the gap in the evolutionary history of this important strain, we sequenced near complete genomes from HIV samples with subgenomic CRF01_AE regions collected in Cameroon and the Democratic Republic of the Congo from 2001 to 2006. HIV genomes were generated from

Indexed as

Genome, ViralPhylogenyRecombination, GeneticDemocratic Republic of the CongoGenetic VariationGenotypeHIV-1HIV InfectionsHumansPhylogeographyCongoCRFHIVmolecular clock analysisphylogeneticssurveillance

Identifiers

PMID32281388
PMCPMC7398440
OpenAlexW3016171922

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.