Evidence map›Paper›PMID 32281387›Full record

ArticleAIDS research and human retroviruses2020

HIV-1 Subtype Distribution and Diversity Over 18 Years in Rakai, Uganda.

Susanna L Lamers, Rebecca Rose, Sissy Cross, Christopher W Rodriguez, Andrew D Redd, Thomas C Quinn, David Serwadda, Joseph Kagaayi, Godfrey Kigozi, Ronald Galiwango and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. HIV-1 subtypes maintain distinctive physicochemical signatures in Nef domains associated with immunoregulation.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Susanna L LamersBioInfoExperts LLC, Thibodaux, Louisiana, USA.
Rebecca RoseBioInfoExperts LLC, Thibodaux, Louisiana, USA.
Sissy CrossBioInfoExperts LLC, Thibodaux, Louisiana, USA.
Christopher W RodriguezBioInfoExperts LLC, Thibodaux, Louisiana, USA.
Andrew D ReddLaboratory of Immunoregulation, Division of Intramural Research, NIAID, NIH, Baltimore, Maryland, USA.
Thomas C QuinnLaboratory of Immunoregulation, Division of Intramural Research, NIAID, NIH, Baltimore, Maryland, USA.
David SerwaddaMakerere University, School of Medicine, Kampala, Uganda.
Joseph KagaayiRakai Health Sciences Program, Kalisizo, Uganda.
Godfrey KigoziRakai Health Sciences Program, Kalisizo, Uganda.
Ronald GaliwangoRakai Health Sciences Program, Kalisizo, Uganda.
Ronald H GrayRakai Health Sciences Program, Kalisizo, Uganda.
M Kate GrabowskiDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Oliver LaeyendeckerLaboratory of Immunoregulation, Division of Intramural Research, NIAID, NIH, Baltimore, Maryland, USA.
Rakai Health Sciences Program · UGNational Institute of Allergy and Infectious Diseases · USJohns Hopkins Medicine · USJohns Hopkins University · USMakerere University · UGUniversity of Mary · US

Funding

Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
International Center for Excellence in Research (ICER) in Uganda: Impact of ARVsZIAAI001040 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI REYNOLDS, STEVEN · 2009 to 2025
$23.5M
International Studies of the Acquired Immune Deficiency Syndrome (AIDS)ZIAAI000361 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI REDD, ANDREW · 2009 to 2025
$15.8M
Methods for Reducing Spatial Uncertainty and Bias in Disease SurveillanceR01AI102939 · NIAID · JOHNS HOPKINS UNIVERSITY · PI LESSLER, JUSTIN · 2013 to 2017
$4.6M
Enhanced Provision of Male Circumcision for HIV Prevention, Rakai, UgandaU01AI100031 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GRAY, RONALD H · 2012 to 2014
$3.2M
CHWs, mHealth, and Combination HIV Prevention in a Hotspot: A Randomized TrialR01MH107275 · NIMH · JOHNS HOPKINS UNIVERSITY · PI CHANG, LARRY WILLIAM · 2015 to 2019
$2.7M
HIV Incidence, Transmission Dynamics and Combination HIV Prevention: Rakai UgandaR01AI110324 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GRAY, RONALD H · 2014 to 2016
$2.4M
Peer health workers: Impact on retention, care and secondary prevention of PLHIVK23MH086338 · NIMH · JOHNS HOPKINS UNIVERSITY · PI CHANG, LARRY WILLIAM · 2010 to 2014
$914k
Revealing women's hidden role as critical components of HIV transmission networks in Rakai, Uganda: an interdisciplinary approachK01AI125086 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GRABOWSKI, MARY KATHRYN · 2016 to 2020
$638k
NIAID NIH HHS K01 AI125086NIAID NIH HHS P30 AI094189NIAID NIH HHS R01 AI102939NIAID NIH HHS R01 AI110324NIAID NIH HHS U01 AI100031NIMH NIH HHS K23 MH086338NIMH NIH HHS R01 MH107275
6 · The paper itself

Abstract

The Rakai Community Cohort Study in south central Uganda has surveyed people aged 15-49 since 1994. Antiretroviral therapy (ART) was introduced in 2004. HIV p24 and gp41 subtype distribution and viral diversity were studied from blood samples collected at three surveys in 1994-1995, 2002-2003, and 2008-2009, which were compared with a new survey round from 2011 to 2012. These included 1364 HIV+ individuals. For both p24 and gp41 domains, the genetic diversity within subtypes A and D was significantly increasing in the pre-ART era and decreased between the last two survey rounds in the ART era (

Indexed as

Genetic VariationAdolescentAdultHIV-1HIV Core Protein p24HIV Envelope Protein gp41HIV InfectionsHumansMiddle AgedProspective StudiesUgandaYoung Adultgp41 protein, Human immunodeficiency virus 1HIV Core Protein p24HIV Envelope Protein gp41sequence diversitysubtype changeUganda

Identifiers

PMID32281387
PMCPMC7476391
OpenAlexW3015479730

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.