Evidence map›Paper›PMID 32280155›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2019

Signal removal methods for highly multiplexed immunofluorescent staining using antibody conjugated oligonucleotides.

Nathan McMahon, Jocelyn Jones, Jennifer Eng, Sunjong Kwon, Young-Hwan Chang, Guillume Thibault, Koei Chin, Michel Nederlof, Joe Gray, Summer L Gibbs

Open access · greenAbstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 98% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Nathan McMahonDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Jocelyn JonesDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Jennifer EngDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Sunjong KwonDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Young-Hwan ChangDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Guillume ThibaultDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Koei ChinDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Michel NederlofQuantitative Imaging Systems, Pittsburg, PA 15238.
Joe GrayDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Summer L GibbsDepartment of Biomedical Engineering, Oregon Health and Science University, Portland, OR 97201.
Oregon Health & Science University · US

Funding

Ultra-High Content Analysis (UHCA) of Single Cells in Tissue: 60+ channel immunofluorescence labeling kits and companion imaging software for everyoneR44CA224994 · NCI · QUANTITATIVE IMAGING SYSTEMS, LLC · PI NEDERLOF, MICHEL · 2017 to 2019
$1.7M
NCI NIH HHS R44 CA224994
6 · The paper itself

Abstract

Successful cancer treatment continues to elude modern medicine and its arsenal of therapeutic strategies. Therapy resistance is driven by significant tumor heterogeneity, complex interactions between malignant, microenvironmental and immune cells and cross talk between signaling pathways. Advances in molecular characterization technologies such as next generation sequencing have helped unravel this network of interactions and have vastly affected how cancer is diagnosed and treated. However, the translation of complex genomic analyses to pathological diagnosis remains challenging using conventional immunofluorescence (IF) staining, which is typically limited to 2-5 antigens. Numerous strategies to increase distinct antigen detection on a single sample have been investigated, but all have deleterious effects on the tissue limiting the maximum number of biomarkers that can be imaged on a single sample and none can be seamlessly integrated into routine clinical workflows. To facilitate ready integration into clinical histopathology, we have developed a novel cyclic IF (cycIF) technology based on antibody conjugated oligonucleotides (Ab-oligos).

Indexed as

antibody conjugationbiomarker distributioncyclic immunofluorescencefluorescence microscopyoligonucleotidephotocleavable linkerrestriction enzymetumor heterogeneity

Identifiers

PMID32280155
PMCPMC7145771
OpenAlexW2918791581

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.