Evidence map›Paper›PMID 32279920›Full record

ArticleBioorganic & medicinal chemistry2020

Progress towards drug discovery for Friedreich's Ataxia: Identifying synthetic oligonucleotides that more potently activate expression of human frataxin protein.

Xiulong Shen, Johnathan Wong, Thahza P Prakash, Frank Rigo, Yanjie Li, Marek Napierala, David R Corey

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
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  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Drug Repositioning in Friedreich Ataxia.Frontiers in neuroscience · 2022
    Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xiulong ShenUniversity of Texas Southwestern Medical Center, Department of Pharmacology, 6001 Forest Park Road, Dallas, TX 75390, United States.
Johnathan WongUniversity of Texas Southwestern Medical Center, Department of Pharmacology, 6001 Forest Park Road, Dallas, TX 75390, United States.
Thahza P PrakashIonis Pharmaceuticals, Carlsbad, CA 92010, United States.
Frank RigoIonis Pharmaceuticals, Carlsbad, CA 92010, United States.
Yanjie LiUniversity of Alabama, Department of Biochemistry and Molecular Genetics, Birmingham, AL 35294, United States.
Marek NapieralaUniversity of Alabama, Department of Biochemistry and Molecular Genetics, Birmingham, AL 35294, United States.
David R CoreyUniversity of Texas Southwestern Medical Center, Department of Pharmacology, 6001 Forest Park Road, Dallas, TX 75390, United States. Electronic address: david.corey@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USIonis Pharmaceuticals (United States) · USUniversity of Alabama · US

Funding

Recognition of Cellular Targets by single and double-stranded nucleic acidsR35GM118103 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI David R Corey · 2016 to 2026
$5.7M
GAA REPEATS INDUCED EPIGENETIC SILENCING IN FRIEDREICH'S ATAXIAR01NS081366 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI NAPIERALA, MAREK · 2012 to 2021
$3.7M
NIGMS NIH HHS R35 GM118103NINDS NIH HHS R01 NS081366
6 · The paper itself

Abstract

Friedreich's Ataxia (FRDA) is an incurable genetic disease caused by an expanded trinucleotide AAG repeat within intronic RNA of the frataxin (FXN) gene. We have previously demonstrated that synthetic antisense oligonucleotides or duplex RNAs that are complementary to the expanded repeat can activate expression of FXN and return levels of FXN protein to near normal. The potency of these compounds, however, was too low to encourage vigorous pre-clinical development. We now report testing of "gapmer" oligonucleotides consisting of a central DNA portion flanked by chemically modified RNA that increases binding affinity. We find that gapmer antisense oligonucleotides are several fold more potent activators of FXN expression relative to previously tested compounds. The potency of FXN activation is similar to a potent benchmark gapmer targeting the nuclear noncoding RNA MALAT-1, suggesting that our approach has potential for developing more effective compounds to regulate FXN expression in vivo.

Indexed as

Drug DiscoveryCells, CulturedDose-Response Relationship, DrugFrataxinFriedreich AtaxiaHumansIron-Binding ProteinsMolecular StructureOligonucleotides, AntisenseStructure-Activity RelationshipFrataxinIron-Binding ProteinsOligonucleotides, AntisenseAntisense oligonucleotideFrataxinFriedreich’s AtaxiaGene activationRNA

Identifiers

PMID32279920
PMCPMC7217746
OpenAlexW3015075087

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.