Evidence map›Paper›PMID 32277993›Full record

ArticleUrology2020

A 17-Gene Panel Genomic Prostate Score Has Similar Predictive Accuracy for Adverse Pathology at Radical Prostatectomy in African American and European American Men.

Adam B Murphy, Samuel Carbunaru, Oluwarotimi S Nettey, Chase Gornbein, Michael A Dixon, Virgilia Macias, Roohollah Sharifi, Rick A Kittles, Ximing Yang, Andre Kajdacsy-Balla and 1 more

Open access · greenAbstract readValidation Study
In one paragraph

Article in Urology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Adam B MurphyDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL. Electronic address: a-murphy2@northwestern.edu.
Samuel CarbunaruDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Oluwarotimi S NetteyDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Chase GornbeinDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Michael A DixonDepartment of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Virgilia MaciasDepartment of Pathology, University of Illinois at Chicago School of Medicine, Chicago, IL.
Roohollah SharifiSection of Urology, Jesse Brown VA Medical Center, Chicago, IL; Department of Urology, University of Illinois at Chicago School of Medicine, Chicago, IL.
Rick A KittlesDivision of Health Equities, Department of Population Sciences, City of Hope Cancer Center, Duarte, CA(.).
Ximing YangDepartment of Pathology, Northwestern University Feinberg School of Medicine, Chicago, IL.
Andre Kajdacsy-BallaDepartment of Pathology, University of Illinois at Chicago School of Medicine, Chicago, IL.
Peter GannDepartment of Pathology, University of Illinois at Chicago School of Medicine, Chicago, IL.
Northwestern University · USUniversity of Illinois Chicago · USCity of Hope · USJesse Brown VA Medical Center · US

Funding

Biological and Environmental modifiers of Vitamin D3 and Prostate Cancer RiskR01MD007105 · NIMHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KITTLES, RICK A. · 2012 to 2016
$2.0M
Comparative Effectiveness of Genomics Assay for Active Surveillance Failure Prediction in African American Men: the impact of genetic ancestry and socioeconomic status.R21CA202552 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MURPHY, ADAM BRYANT · 2016 to 2017
$394k
Biological & Environmental Mediators of Vitamin D and Aggressive Prostate CancerIK2CX000926 · VA · JESSE BROWN VA MEDICAL CENTER · PI MURPHY, ADAM BRYANT · 2013 to 2019
–
CSRD VA IK2 CX000926NCI NIH HHS R21 CA202552NIMHD NIH HHS R01 MD007105
6 · The paper itself

Abstract

objectiveTo validate the 17-gene Oncotype DX Genomic Prostate Score (GPS) as a predictor of adverse pathology (AP) in African American (AA) men and to assess the distribution of GPS in AA and European American (EA) men with localized prostate cancer.

methodsThe study populations were derived from 2 multi-institutional observational studies. Between February 2009 and September 2014, AA and EA men who elected immediate radical prostatectomy after a ≥10-core transrectal ultrasound biopsy were included in the study. Logistic regressions, area under the receiver operating characteristics curves (AUC), calibration curves, and predictive values were used to compare the accuracy of GPS. AP was defined as primary Gleason grade 4, presence of any Gleason pattern 5, and/or non-organ-confined disease (≥pT3aN0M0) at radical prostatectomy.

resultsOverall, 96 AA and 76 EA men were selected and 46 (26.7%) had AP. GPS result was a significant predictor of AP (odds ratio per 20 GPS units [OR/20 units] in AA: 4.58; 95% confidence interval (CI) 1.8-11.5, P = .001; and EA: 4.88; 95% CI 1.8-13.5, P = .002). On multivariate analysis, there was no significant interaction between GPS and race (P >.10). GPS remained significant in models adjusted for either National Comprehensive Cancer Network (NCCN) risk group or Cancer of the Prostate Risk Assessment (CAPRA) score. In race-stratified models, area under the receiver operating characteristics curves for GPS/20 units was 0.69 for AAs vs 0.74 for EAs (P = .79). The GPS distributions were not statistically different by race (all P >.05).

conclusionIn this clinical validation study, the Oncotype DX GPS is an independent predictor of AP at prostatectomy in AA and EA men with similar predictive accuracy and distributions.

Indexed as

ProstatectomyAgedBiopsy, Large-Core NeedleBlack or African AmericanGenetic TestingGenomicsHumansMaleMiddle AgedNeoplasm GradingObservational Studies as TopicPredictive Value of TestsPrognosisProstateProstatic NeoplasmsRace Factors

Identifiers

PMID32277993
PMCPMC7387177
OpenAlexW3015711998

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.