Evidence map›Paper›PMID 32277078›Full record

ArticleScientific reports2020

A novel flow cytometry assay based on bacteriophage-derived proteins for Staphylococcus detection in blood.

Susana P Costa, Nicolina M Dias, Luís D R Melo, Joana Azeredo, Sílvio B Santos, Carla M Carvalho

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Susana P CostaCentre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
Nicolina M DiasCentre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
Luís D R MeloCentre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
Joana AzeredoCentre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
Sílvio B SantosCentre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
Carla M CarvalhoCentre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal. carla.carvalho@inl.int.
University of Minho · PTInternational Iberian Nanotechnology Laboratory · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bloodstream infections (BSIs) are considered a major cause of death worldwide. Staphylococcus spp. are one of the most BSIs prevalent bacteria, classified as high priority due to the increasing multidrug resistant strains. Thus, a fast, specific and sensitive method for detection of these pathogens is of extreme importance. In this study, we have designed a novel assay for detection of Staphylococcus in blood culture samples, which combines the advantages of a phage endolysin cell wall binding domain (CBD) as a specific probe with the accuracy and high-throughput of flow cytometry techniques. In order to select the biorecognition molecule, three different truncations of the C-terminus of Staphylococcus phage endolysin E-LM12, namely the amidase (AMI), SH3 and amidase+SH3 (AMI_SH3) were cloned fused with a green fluorescent protein. From these, a higher binding efficiency to Staphylococcus cells was observed for AMI_SH3, indicating that the amidase domain possibly contributes to a more efficient binding of the SH3 domain. The novel phage endolysin-based flow cytometry assay provided highly reliable and specific detection of 1-5 CFU of Staphylococcus in 10 mL of spiked blood, after 16 hours of enrichment culture. Overall, the method developed herein presents advantages over the standard BSIs diagnostic methods, potentially contributing to an early and effective treatment of BSIs.

Indexed as

BacteremiaBacterial ProteinsFlow CytometryLimit of DetectionMolecular ProbesProtein DomainsReproducibility of ResultsStaphylococcal InfectionsStaphylococcusStaphylococcus PhagesViral ProteinsBacterial ProteinsMolecular ProbesViral Proteins

Identifiers

PMID32277078
PMCPMC7148305
OpenAlexW3016050352

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.