Evidence map›Paper›PMID 32275884›Full record

ArticleAmerican journal of human genetics2020

Bi-allelic Loss-of-Function Variants in NUP188 Cause a Recognizable Syndrome Characterized by Neurologic, Ocular, and Cardiac Abnormalities.

Alison M Muir, Jennifer L Cohen, Sarah E Sheppard, Pavithran Guttipatti, Tsz Y Lo, Natalie Weed, Dan Doherty, Danielle DeMarzo, Christina R Fagerberg, Lars Kjærsgaard and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. Nuclear Proteome Map of Mouse Heart Chambers.Molecular & cellular proteomics : MCP · 2026
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  10. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  11. Article
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  14. Non-classical functions of nuclear pore proteins in ciliopathy.Frontiers in molecular biosciences · 2023
    Review
  15. Article
  16. Structure and Function of the Nuclear Pore Complex.Cold Spring Harbor perspectives in biology · 2022
    Review
  17. Article
  18. The Expanding Phenotypic Spectrum ofMolecular syndromology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Alison M MuirDepartment of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA.
Jennifer L CohenDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Sarah E SheppardDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Pavithran GuttipattiRaymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Tsz Y LoRaymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Natalie WeedDepartment of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA.
Dan DohertyDepartment of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA; Seattle Children's Hospital, Seattle, WA 98105, USA; Brotman Baty Institute for Precision Medicine, Seattle, WA 98195, USA.
Danielle DeMarzoDepartment of Pediatrics, University of Oklahoma, Oklahoma City, OK 73104, USA.
Christina R FagerbergDepartment of Clinical Genetics, Odense University Hospital, Denmark.
Lars KjærsgaardHans Christian Andersen Children's Hospital, Odense University Hospital, Denmark.
Martin J LarsenDepartment of Clinical Genetics, Odense University Hospital, Denmark.
Patrick RumpDepartment of Genetics, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Katharina LöhnerDepartment of Genetics, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Yoel HirschThe Committee for Prevention of Jewish Genetic Diseases, Dor Yeshorim, Jerusalem, Israel.
David A ZeeviThe Committee for Prevention of Jewish Genetic Diseases, Dor Yeshorim, Jerusalem, Israel.
Elaine H ZackaiDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Elizabeth BhojDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Yuanquan SongRaymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: songy2@email.chop.edu.
Heather C MeffordDepartment of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, WA 98195, USA; Seattle Children's Hospital, Seattle, WA 98105, USA; Brotman Baty Institute for Precision Medicine, Seattle, WA 98195, USA. Electronic address: hmefford@uw.edu.
Children's Hospital of Philadelphia · USOdense University Hospital · DKCenter for Jewish–Christian Understanding and Cooperation · ILSeattle Children's Hospital · USUniversity Medical Center Groningen · NLUniversity of Washington · USOklahoma City University · US

Funding

NRSA Training CoreTL1TR001880 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$10.0M
Mechanisms of Brain Dysmorphology in MN1 C-Terminal Truncation Syndrome, a Novel Intellectual Developmental Disability Disorder P50HD103524 · NICHD · UNIVERSITY OF WASHINGTON · PI Sandra E Juul · 2020 to 2026
$9.9M
A Genomic Approach to EpilepsyR01NS069605 · NINDS · UNIVERSITY OF WASHINGTON · PI MEFFORD, HEATHER C. · 2010 to 2019
$4.9M
NCATS NIH HHS TL1 TR001880NICHD NIH HHS P50 HD103524NINDS NIH HHS R01 NS069605
6 · The paper itself

Abstract

Nucleoporins (NUPs) are an essential component of the nuclear-pore complex, which regulates nucleocytoplasmic transport of macromolecules. Pathogenic variants in NUP genes have been linked to several inherited human diseases, including a number with progressive neurological degeneration. We present six affected individuals with bi-allelic truncating variants in NUP188 and strikingly similar phenotypes and clinical courses, representing a recognizable genetic syndrome; the individuals are from four unrelated families. Key clinical features include congenital cataracts, hypotonia, prenatal-onset ventriculomegaly, white-matter abnormalities, hypoplastic corpus callosum, congenital heart defects, and central hypoventilation. Characteristic dysmorphic features include small palpebral fissures, a wide nasal bridge and nose, micrognathia, and digital anomalies. All affected individuals died as a result of respiratory failure, and five of them died within the first year of life. Nuclear import of proteins was decreased in affected individuals' fibroblasts, supporting a possible disease mechanism. CRISPR-mediated knockout of NUP188 in Drosophila revealed motor deficits and seizure susceptibility, partially recapitulating the neurological phenotype seen in affected individuals. Removal of NUP188 also resulted in aberrant dendrite tiling, suggesting a potential role of NUP188 in dendritic development. Two of the NUP188 pathogenic variants are enriched in the Ashkenazi Jewish population in gnomAD, a finding we confirmed with a separate targeted population screen of an international sampling of 3,225 healthy Ashkenazi Jewish individuals. Taken together, our results implicate bi-allelic loss-of-function NUP188 variants in a recessive syndrome characterized by a distinct neurologic, ophthalmologic, and facial phenotype.

Indexed as

AllelesActive Transport, Cell NucleusAnimalsbeta KaryopherinsBrainCell NucleusChild, PreschoolDendritesDrosophila melanogasterDrosophila ProteinsEye AbnormalitiesFemaleFibroblastsGenes, RecessiveHeart Defects, CongenitalHumansbeta KaryopherinsDrosophila ProteinsNuclear Pore Complex ProteinsNup188 protein, DrosophilaNUP188 protein, humanTNPO1 protein, humanAshkenazi Jewishautosomal recessivecongenital cataractscongenital heart defectsdendritic arborizationmicrocephalynegative geotaxisnuclear pore complexnucleoporinNUP188

Identifiers

PMID32275884
PMCPMC7212259
OpenAlexW3015449602

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.