Evidence map›Paper›PMID 32273595›Full record

ArticleScientific reports2020

Mitochondrial plastid DNA can cause DNA barcoding paradox in plants.

Hyun-Seung Park, Murukarthick Jayakodi, Sae Hyun Lee, Jae-Hyeon Jeon, Hyun-Oh Lee, Jee Young Park, Byeong Cheol Moon, Chang-Kug Kim, Rod A Wing, Steven G Newmaster and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
19.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 80 citations in OpenAlex.

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  17. The complete mitochondrial genome ofFrontiers in plant science · 2023
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  20. Comparative Analysis of Chloroplast Genomes ofPlants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Hyun-Seung ParkDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Murukarthick JayakodiDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Sae Hyun LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Jae-Hyeon JeonDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Hyun-Oh LeePhyzen Genomics Institute, Seongnam, 13558, Korea.
Jee Young ParkDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Byeong Cheol MoonHerbal Medicine Research Division, Korea Institute of Oriental Medicine, 1672 Yuseong-daero, Yuseong-gu, Daejeon, 34054, Republic of Korea.
Chang-Kug KimGenomics Division, National Institute of Agricultural Sciences, Jeonju, 54874, Republic of Korea.ORCID http://orcid.org/0000-0002-8770-1736
Rod A WingArizona Genomics Institute, School of Plant Sciences, The University of Arizona, Tucson, AZ, USA.ORCID http://orcid.org/0000-0001-6633-6226
Steven G NewmasterNHP Research Alliance, College of Biological Sciences, University of Guelph, Guelph, Ontario, Canada.
Ji Yeon KimDepartment of Food Science and Technology, Seoul National University of Science and Technology, Seoul, 01811, Korea.ORCID http://orcid.org/0000-0002-4316-2726
Tae-Jin YangDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea. tjyang@snu.ac.kr.ORCID http://orcid.org/0000-0002-9676-8801
Seoul National University · KRKorea Institute of Oriental Medicine · KRNational Institute of Agricultural Science and Technology · KRPhyzen (South Korea) · KRSeoul National University of Science and Technology · KRUniversity of Arizona · USUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transfer of ancestral plastid genomes into mitochondrial genomes to generate mitochondrial plastid DNA (MTPT) is known to occur in plants, but its impacts on mitochondrial genome complexity and the potential for causing a false-positive DNA barcoding paradox have been underestimated. Here, we assembled the organelle genomes of Cynanchum wilfordii and C. auriculatum, which are indigenous medicinal herbs in Korea and China, respectively. In both species, it is estimated that 35% of the ancestral plastid genomes were transferred to mitochondrial genomes over the past 10 million years and remain conserved in these genomes. Some plastid barcoding markers co-amplified the conserved MTPTs and caused a barcoding paradox, resulting in mis-authentication of botanical ingredients and/or taxonomic mis-positioning. We identified dynamic and lineage-specific MTPTs that have contributed to mitochondrial genome complexity and might cause a putative barcoding paradox across 81 plant species. We suggest that a DNA barcoding guidelines should be developed involving the use of multiple markers to help regulate economically motivated adulteration.

Indexed as

CynanchumDNA Barcoding, TaxonomicDNA, ChloroplastDNA, MitochondrialEvolution, MolecularPhylogenyDNA, ChloroplastDNA, Mitochondrial

Identifiers

PMID32273595
PMCPMC7145815
OpenAlexW3016127071

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.