Evidence map›Paper›PMID 32271167›Full record

Trial reportJCI insight2020

Multiexon deletion alleles of ATF6 linked to achromatopsia.

Eun-Jin Lee, Wei-Chieh Jerry Chiang, Heike Kroeger, Chloe Xiaoke Bi, Daniel L Chao, Dorota Skowronska-Krawczyk, Rebecca R Mastey, Stephen H Tsang, Leon Chea, Kyle Kim and 9 more

Abstract readClinical TrialMulticenter Study
In one paragraph

Trial report in JCI insight, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Gene Therapy for Achromatopsia.International journal of molecular sciences · 2024
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. ATF6 is essential for human cone photoreceptor development.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Eun-Jin LeeDepartment of Ophthalmology, Shiley Eye Institute, and.
Wei-Chieh Jerry ChiangDepartment of Pathology, UCSD, San Diego, California, USA.
Heike KroegerDepartment of Pathology, UCSD, San Diego, California, USA.
Chloe Xiaoke BiDepartment of Pathology, UCSD, San Diego, California, USA.
Daniel L ChaoDepartment of Ophthalmology, Shiley Eye Institute, and.
Dorota Skowronska-KrawczykDepartment of Ophthalmology, Shiley Eye Institute, and.
Rebecca R MasteyDepartment of Ophthalmology and Visual Sciences, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Stephen H TsangDepartments of Ophthalmology and Pathology and Cell Biology, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York, USA.
Leon CheaDepartment of Pathology, Stanford University, Stanford, California, USA.
Kyle KimDepartment of Pathology, UCSD, San Diego, California, USA.
Scott R LambertDepartment of Ophthalmology, Stanford University, Stanford, California, USA.
Julia Md GrandjeanDepartment of Molecular Medicine, The Scripps Research Institute, San Diego, California, USA.
Britta BaumannInstitute for Ophthalmic Research, Centre for Ophthalmology, University of Tübingen, Tübingen, Germany.
Isabelle AudoSorbonne Université, INSERM, CNRS, Institut de la Vision, Paris, France.
Susanne KohlInstitute for Ophthalmic Research, Centre for Ophthalmology, University of Tübingen, Tübingen, Germany.
Anthony T MooreDepartment of Ophthalmology, UCSF, San Francisco, California, USA.
R Luke WisemanDepartment of Molecular Medicine, The Scripps Research Institute, San Diego, California, USA.
Joseph CarrollDepartment of Ophthalmology and Visual Sciences, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Jonathan H LinDepartment of Ophthalmology, Stanford University, Stanford, California, USA.

Funding

The Jackson Laboratory Center for Precision Genetics: From New Models to Novel TherapeuticsU54OD020351 · OD · JACKSON LABORATORY · PI NISHINA, PATSY M · 2015 to 2019
$10.2M
Assessing Photoreceptor Structure and Function in Normal and Diseased RetinaeR01EY017607 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI Joseph Carroll · 2008 to 2026
$8.3M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
Discovering small molecules activators of stress responsive signalingR01AG046495 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI JEFFERY W KELLY, Rockland Luke Wiseman · 2013 to 2026
$6.0M
Protein Homeostasis and Proteotoxicity MechanismsR01NS088485 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LIN, JONATHAN · 2015 to 2024
$3.0M
Molecular Pathology of AchromatopsiaR01EY027335 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LIN, JONATHAN · 2017 to 2019
$1.2M
Cellular and Molecular Mechanisms of Age-Related Retinal DegenerationI01BX002284 · VA · VETERANS ADMIN PALO ALTO HEALTH CARE SYS · PI LIN, JONATHAN · 2014 to 2023
–
BLRD VA I01 BX002284NEI NIH HHS R01 EY017607NEI NIH HHS R01 EY018213NEI NIH HHS R01 EY027335NIA NIH HHS R01 AG046495NIH HHS U54 OD020351NINDS NIH HHS R01 NS088485
6 · The paper itself

Abstract

Achromatopsia (ACHM) is an autosomal recessive disease that results in severe visual loss. Symptoms of ACHM include impaired visual acuity, nystagmus, and photoaversion starting from infancy; furthermore, ACHM is associated with bilateral foveal hypoplasia and absent or severely reduced cone photoreceptor function on electroretinography. Here, we performed genetic sequencing in 3 patients from 2 families with ACHM, identifying and functionally characterizing 2 mutations in the activating transcription factor 6 (ATF6) gene. We identified a homozygous deletion covering exons 8-14 of the ATF6 gene from 2 siblings from the same family. In another patient from a different family, we identified a heterozygous deletion covering exons 2 and 3 of the ATF6 gene found in trans with a previously identified ATF6 c.970C>T (p.Arg324Cys) ACHM disease allele. Recombinant ATF6 proteins bearing these exon deletions showed markedly impaired transcriptional activity by qPCR and RNA-Seq analysis compared with WT-ATF6. Finally, RNAscope revealed that ATF6 and the related ATF6B transcripts were expressed in cones as well as in all retinal layers in normal human retina. Overall, our data identify loss-of-function ATF6 disease alleles that cause human foveal disease.

Indexed as

AllelesBase SequenceExonsSequence DeletionActivating Transcription Factor 6AdolescentColor Vision DefectsFemaleHEK293 CellsHumansMaleActivating Transcription Factor 6ATF6 protein, humanCell stressOphthalmology

Identifiers

PMID32271167
PMCPMC7205249

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.