Evidence map›Paper›PMID 32269229›Full record

ArticleScientific reports2020

Mutually exclusive locales for N-linked glycans and disorder in human glycoproteins.

Shyamili Goutham, Indu Kumari, Dharma Pally, Alvina Singh, Sujasha Ghosh, Yusuf Akhter, Ramray Bhat

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. N-terminal tail prolines of Gal-3 mediate its oligomerization/phase separation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shyamili GouthamDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Sciences, Bangalore, 560012, India.
Indu KumariSchool of Earth and Environmental Sciences, Central University of Himachal Pradesh, District-Kangra, Shahpur, Himachal Pradesh, 176206, India.
Dharma PallyDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Sciences, Bangalore, 560012, India.
Alvina SinghDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Sciences, Bangalore, 560012, India.
Sujasha GhoshDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Sciences, Bangalore, 560012, India.
Yusuf AkhterDepartment of Biotechnology, Babasaheb Bhimrao Ambedkar University, Vidya Vihar, Raebareli Road, Lucknow, Uttar Pradesh, 226025, India.ORCID http://orcid.org/0000-0001-9564-9790
Ramray BhatDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Sciences, Bangalore, 560012, India. ramray@iisc.ac.in.
Indian Institute of Science Bangalore · INBabasaheb Bhimrao Ambedkar University · INCentral University of Himachal Pradesh · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/17/2/503312Wellcome Trust
6 · The paper itself

Abstract

Several post-translational protein modifications lie predominantly within regions of disorder: the biased localization has been proposed to expand the binding versatility of disordered regions. However, investigating a representative dataset of 500 human N-glycoproteins, we observed the sites of N-linked glycosylations or N-glycosites, to be predominantly present in the regions of predicted order. When compared with disordered stretches, ordered regions were not found to be enriched for asparagines, serines and threonines, residues that constitute the sequon signature for conjugation of N-glycans. We then investigated the basis of mutual exclusivity between disorder and N-glycosites on the basis of amino acid distribution: when compared with control ordered residue stretches without any N-glycosites, residue neighborhoods surrounding N-glycosites showed a depletion of bulky, hydrophobic and disorder-promoting amino acids and an enrichment for flexible and accessible residues that are frequently found in coiled structures. When compared with control disordered residue stretches without any N-glycosites, N-glycosite neighborhoods were depleted of charged, polar, hydrophobic and flexible residues and enriched for aromatic, accessible and order-promoting residues with a tendency to be part of coiled and β structures. N-glycosite neighborhoods also showed greater phylogenetic conservation among amniotes, compared with control ordered regions, which in turn were more conserved than disordered control regions. Our results lead us to propose that unique primary structural compositions and differential propensities for evolvability allowed for the mutual spatial exclusion of N-glycosite neighborhoods and disordered stretches.

Indexed as

Amino Acid SequenceAnimalsAsparagineComputational BiologyEvolution, MolecularGene OntologyGlycoproteinsGlycosylationHumansHydrophobic and Hydrophilic InteractionsPhylogenyPolysaccharidesProtein ConformationProtein Processing, Post-TranslationalUnfolded Protein ResponseAsparagineGlycoproteinsPolysaccharides

Identifiers

PMID32269229
PMCPMC7142085
OpenAlexW3016242752

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.