Evidence map›Paper›PMID 32269203›Full record

ArticleMicrobes and environments2020

Diversity of Antibiotic Biosynthesis Gene-possessing Rhizospheric Fluorescent Pseudomonads in Japan and Their Biocontrol Efficacy.

Nobutaka Someya, Masaharu Kubota, Kasumi Takeuchi, Yusuke Unno, Ryohei Sakuraoka, Tomohiro Morohoshi

Open access · diamondAbstract read
In one paragraph

Article in Microbes and environments, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Nobutaka SomeyaInstitute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization (NARO).
Masaharu KubotaInstitute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization (NARO).
Kasumi TakeuchiInstitute of Agrobiological Sciences, NARO.
Yusuke UnnoInstitute for Environmental Sciences.
Ryohei SakuraokaDepartment of Innovation Systems Engineering, Graduate School of Engineering, Utsunomiya University.
Tomohiro MorohoshiDepartment of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University.
Institute of Vegetable and Floriculture Science · JPUtsunomiya University · JPInstitute for Environmental Sciences · JPInstitute of Agrobiological Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

More than 3,000 isolates of fluorescent pseudomonads have been collected from plant roots in Japan and screened for the presence of antibiotic-synthesizing genes. In total, 927 hydrogen cyanide (HCN)-, 47 2,4-diacetylphloroglucinol (PHL)-, 6 pyoluteorin (PLT)-, 14 pyrrolnitrin (PRN)-, and 8 phenazine (PHZ)-producing isolates have been detected. A cluster analysis (≥99% identity) identified 10 operational taxonomic units (OTUs) in antibiotic biosynthesis gene-possessing pseudomonads. OTU HLR (PHL, PLT, and PRN) contained four antibiotics: HCN, PHL, PLT, and PRN, while OTU RZ (PRN and PHZ) contained three: HCN, PRN, and PHZ. OTU H1, H2, H3, H4, H5, H6, and H7 (PHL1-7) contained two antibiotics: HCN and PHL, while OTU H8 (PHL8) contained one: PHL. Isolates belonging to OTU HLR and RZ suppressed damping-off disease in cabbage seedlings caused by Rhizoctonia solani. Effective strains belonging to OTU HLR and RZ were related to Pseudomonas protegens and Pseudomonas chlororaphis, respectively. Antibiotic biosynthesis gene-possessing fluorescent pseudomonads are distributed among different geographical sites in Japan and plant species.

Indexed as

FluorescenceRhizosphereAnti-Bacterial AgentsBiological Control AgentsGenes, BacterialGenetic VariationJapanPlant RootsPseudomonasPseudomonas fluorescensRNA, Ribosomal, 16SSoil MicrobiologyAnti-Bacterial AgentsBiological Control AgentsRNA, Ribosomal, 16S2,4-diacetylphloroglucinolbiocontrolfluorescent pseudomonadsphenazineRhizoctonia solani

Identifiers

PMID32269203
PMCPMC7308580
OpenAlexW3016148506

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.