Evidence map›Paper›PMID 32269122›Full record

ArticleJournal of virology2020

Identification of Common CD8

Saori Sakabe, Jessica N Hartnett, Nhi Ngo, Augustine Goba, Mambu Momoh, John Demby Sandi, Lansana Kanneh, Beatrice Cubitt, Selma D Garcia, Brian C Ware and 19 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Decoding the human CD4Cell reports. Medicine · 2026
    Article
  4. Article
  5. Article
  6. Robust polyfunctional CD8The Journal of general virology · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 8 institutions in 3 countries.

Saori SakabeViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Jessica N HartnettDepartment of Microbiology and Immunology, Tulane University School of Medicine, New Orleans, Louisiana, USA.
Nhi NgoViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Augustine GobaViral Hemorrhagic Fever Program, Kenema Government Hospital, Kenema, Sierra Leone.
Mambu MomohViral Hemorrhagic Fever Program, Kenema Government Hospital, Kenema, Sierra Leone.
John Demby SandiViral Hemorrhagic Fever Program, Kenema Government Hospital, Kenema, Sierra Leone.
Lansana KannehViral Hemorrhagic Fever Program, Kenema Government Hospital, Kenema, Sierra Leone.
Beatrice CubittViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Selma D GarciaViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Brian C WareViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Dylan KotliarFAS Center for Systems Biology, Harvard University, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Refugio Robles-SikisakaViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Karthik GangavarapuDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, USA.
Luis M BrancoZalgen Labs, Germantown, Maryland, USA.
Philomena EromonAfrican Center of Excellence for Genomics of Infectious Disease (ACEGID), Redeemers University, Ede, Nigeria.
Ikponmwosa OdiaInstitute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria.
Ephraim Ogbaini-EmovonInstitute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria.
Onikepe FolarinAfrican Center of Excellence for Genomics of Infectious Disease (ACEGID), Redeemers University, Ede, Nigeria.
Sylvanus OkogbeninInstitute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria.
Peter O OkokhereInstitute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Nigeria.
Christian HappiAfrican Center of Excellence for Genomics of Infectious Disease (ACEGID), Redeemers University, Ede, Nigeria.
Pardis C SabetiFAS Center for Systems Biology, Harvard University, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Kristian G AndersenViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Robert F GarryDepartment of Microbiology and Immunology, Tulane University School of Medicine, New Orleans, Louisiana, USA.
Juan Carlos de la TorreViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Donald S GrantViral Hemorrhagic Fever Program, Kenema Government Hospital, Kenema, Sierra Leone.
John S SchieffelinDepartment of Pediatrics, Tulane University School of Medicine, New Orleans, Louisiana, USA.
Michael B A OldstoneViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Brian M SullivanViral Immunobiology Laboratory, Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, USA bsully@scripps.edu.
Scripps Research Institute · USIrrua Specialist Teaching Hospital · NGRedeemer's University · NGUniversity of Sierra Leone · SLBroad Institute · USMinistry of Health and Sanitation · SLTulane University · USZalgen (United States) · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Specific and Broadly Active Monoclonal Antibody Therapeutics Against The FilovirusesU19AI142790 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SAPHIRE, ERICA OLLMANN · 2019 to 2023
$40.0M
Mechanistic Virology CoreU19AI109762 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SAPHIRE, ERICA OLLMANN · 2014 to 2018
$29.6M
Structure-based design of novel Lassa virus glycoproteins for vaccine developmentR01AI132244 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2017 to 2021
$6.5M
Antibody immunotherapeutics for biodefense against Lassa virusR01AI104621 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2013 to 2017
$5.8M
Preclinical evaluation of a potent Lassa fever immunotherapeutic antibody cocktailR01AI132223 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2017 to 2021
$5.7M
Project 2. Expansion of Clinical Research Capacity at Kenema Government HospitalU19AI115589 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2015 to 2019
$3.6M
Clinical Sequelae and Urogenital Viral Dynamics in Survivors of Ebola Virus DiseaseR01AI123535 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FISCHER, WILLIAM, WOHL, DAVID A · 2017 to 2021
$3.3M
NIAID NIH HHS HHSN272201400048CNIAID NIH HHS R01 AI104621NIAID NIH HHS R01 AI123535NIAID NIH HHS R01 AI132223NIAID NIH HHS R01 AI132244NIAID NIH HHS U19 AI109762NIAID NIH HHS U19 AI115589NIAID NIH HHS U19 AI142790NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Early and robust T cell responses have been associated with survival from Lassa fever (LF), but the Lassa virus-specific memory responses have not been well characterized. Regions within the virus surface glycoprotein (GPC) and nucleoprotein (NP) are the main targets of the Lassa virus-specific T cell responses, but, to date, only a few T cell epitopes within these proteins have been identified. We identified GPC and NP regions containing T cell epitopes and HLA haplotypes from LF survivors and used predictive HLA-binding algorithms to identify putative epitopes, which were then experimentally tested using autologous survivor samples. We identified 12 CD8-positive (CD8

Indexed as

AdolescentAmino Acid SequenceAnimalsAntibodies, ViralAntigens, ViralCD8-Positive T-LymphocytesChildEpitopes, T-LymphocyteFemaleGenes, ReporterGreen Fluorescent ProteinsHaplotypesHLA-DQ AntigensHost-Pathogen InteractionsHumansImmune SeraAntibodies, ViralAntigens, Viralenhanced green fluorescent proteinEpitopes, T-LymphocyteGreen Fluorescent ProteinsHLA-DQ AntigensImmune SeraNucleoproteinsViral Envelope ProteinsarenavirusepitopesLassa feverLassa virusmemory T cells

Identifiers

PMID32269122
PMCPMC7307091
OpenAlexW3015563688

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.