Evidence map›Paper›PMID 32267092›Full record

ArticleMolecular plant pathology2020

Transcriptome of Pectobacterium carotovorum subsp. carotovorum PccS1 infected in calla plants in vivo highlights a spatiotemporal expression pattern of genes related to virulence, adaptation, and host response.

Jiaqin Fan, Lin Ma, Chendi Zhao, Jingyuan Yan, Shu Che, Zhaowei Zhou, Huan Wang, Liuke Yang, Baishi Hu

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. RpoS-Regulated Genes and Phenotypes in the Phytopathogenic BacteriumInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Transcriptional Profiling of the Effect ofAntibiotics (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. An OFrontiers in microbiology · 2023
    Article
  9. Article
  10. Effects of NaturalMolecules (Basel, Switzerland) · 2022
    Article
  11. Editorial: Genome-Wide Analyses ofFrontiers in plant science · 2022
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jiaqin FanLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.ORCID 0000-0002-0547-8965
Lin MaLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Chendi ZhaoLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Jingyuan YanLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Shu CheLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Zhaowei ZhouLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Huan WangLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Liuke YangLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Baishi HuLaboratory of Bacteriology, Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China.
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial pathogens from the genus Pectobacterium cause soft rot in various plants, and result in important economic losses worldwide. We understand much about how these pathogens digest their hosts and protect themselves against plant defences, as well as some regulatory networks in these processes. However, the spatiotemporal expression of genome-wide infection of Pectobacterium remains unclear, although researchers analysed this in some phytopathogens. In the present work, comparing the transcriptome profiles from cellular infection with growth in minimal and rich media, RNA-Seq analyses revealed that the differentially expressed genes (log

Indexed as

Host-Pathogen InteractionsTranscriptomeAdaptation, PhysiologicalCalla PlantGene Expression ProfilingGlucansPectobacteriumPlant DiseasesPlant LeavesSequence Analysis, RNAVirulencecalloseGlucansadaptationhost responseinfection in vivoPectobacterium carotovorumtranscriptomevirulence

Identifiers

PMID32267092
PMCPMC7214478
OpenAlexW3014978279

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.