Evidence map›Paper›PMID 32266769›Full record

ArticleVeterinary medicine and science2020

Genetic variation of Brucella isolates at strain level in Egypt.

Nour H Abdel-Hamid, Essam M El-Bauomy, Hazem M Ghobashy, Abeer A Shehata

Open access · goldAbstract read
In one paragraph

Article in Veterinary medicine and science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Risk factors and Molecular genotyping ofOne health (Amsterdam, Netherlands) · 2021
    Article
  6. Tracking the Distribution ofMicroorganisms · 2021
    Article
  7. Article
  8. Article
  9. MLVA-16 Genotyping ofPathogens (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Nour H Abdel-HamidDepartment of Brucellosis Research, Animal Health Research Institute, Agricultural Research Center, Giza, Dokki, Egypt.ORCID 0000-0001-5554-7984
Essam M El-BauomyDepartment of Brucellosis Research, Animal Health Research Institute, Agricultural Research Center, Giza, Dokki, Egypt.
Hazem M GhobashyDepartment of Brucellosis Research, Animal Health Research Institute, Agricultural Research Center, Giza, Dokki, Egypt.
Abeer A ShehataFayoum Regional Laboratory, Animal Health Research Institute, Agricultural Research Center, Fayoum, Egypt.
Animal Health Research Institute · TWAgricultural Research Center · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, Multiple Locus Variable Number Tandem Repeat Analysis (MLVA-16) was performed on 18 Brucella isolates identified bacteriologically and molecularly (AMOS-PCR) as Brucella abortus (n = 6) and Brucella melitensis (n = 12). This was aimed to study the genetic association among some Egyptian Brucella genotypes isolated during the period from 2002 to 2013 along with the global genotypes database. MLVA-16 analysis for B. melitensis and B. abortus strains illustrates a total of 11, and 3 genotypes with 10 and 1 singleton genotypes, respectively. B. melitensis strains displayed greater markers diversity by VNTRs analysis of the 16 loci than B. abortus and this was attributed mainly to the diverging in panel 2B markers. B. melitensis genotype M4_Fayoum_Giza (3,5,3,13,1,1,3,3,8,21,8,7,5,9,5,3) was the only predominated genotype circulating between two different governorates. The most common B. abortus genotype, GT A3_Dakahlia (4,5,4,12,2,2,3,3,6,21,8,4,4,3,4,4), was present in three identical isolates. In phylogeny, Egyptian B. abortus bv1 genotypes were closely related to East Asian strain (for the first time), Western Mediterranean and Americas clonal lineages. B. melitensis local genotypes exhibit a genetic relatedness mostly to Western Mediterranean clonal lineage and one strain of Eastern Mediterranean clonal lineage. In conclusion, the geographic location is not the only factor stands behind the high genetic similarity of the Egyptian Brucella genotypes. These low variations may be a result of a stepwise mutational event of the most variable loci from a very limited number of ancestors especially during the transmission through non-preference hosts. The authors encourage the authorities in charge to establish pre-movement testing to reduce the risk of brucellosis spread.

Indexed as

Genetic VariationBrucella abortusBrucella melitensisEgyptBrucella abortusBrucella melitensisEgyptmarkers diversityMLVA-16phylogeny

Identifiers

PMID32266769
PMCPMC7397911
OpenAlexW3015158041

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.