Evidence map›Paper›PMID 32266537›Full record

ArticleJournal of cancer research and clinical oncology2020

Genome-wide CRISPR knockout screens identify ADAMTSL3 and PTEN genes as suppressors of HCC proliferation and metastasis, respectively.

Xiaoli Zhou, Ruibin Li, Renwei Jing, Bingfeng Zuo, Quan Zheng

Open access · hybridAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 43 citations in OpenAlex.

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  11. Exploring liver cancer biology through functional genetic screens.Nature reviews. Gastroenterology & hepatology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xiaoli ZhouDepartment of Clinical Laboratory, Sichuan Provincial People's Hospital Affiliate Wenjiang Hospital, Wanchun East Road, Wenjiang District, Chengdu, 611130, China.
Ruibin LiDepartment of Cell Biology and Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Tianjin Medical University, Qixiangtai Road, Heping District, Tianjin, 300070, China.
Renwei JingDepartment of Cell Biology and Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Tianjin Medical University, Qixiangtai Road, Heping District, Tianjin, 300070, China.
Bingfeng ZuoDepartment of Cell Biology and Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Tianjin Medical University, Qixiangtai Road, Heping District, Tianjin, 300070, China.
Quan ZhengDepartment of Clinical Laboratory, Sichuan Provincial People's Hospital Affiliate Wenjiang Hospital, Wanchun East Road, Wenjiang District, Chengdu, 611130, China. wjjykzq@163.com.
Tianjin Medical University · CN

Funding

National Natural Science Foundation of China 81501531
6 · The paper itself

Abstract

purposeIt is important for hepatocellular carcinoma (HCC) treatment that the targets related to its progression are identified. Clustered regularly interspaced short palindromic repeat (CRISPR)-associated nuclease 9 (Cas9)-based genetic screening is a powerful tool for identifying genes with loss-of-function mutations that are critical for tumour growth and metastasis.

methodsWe transduced the human SMMC7721 HCC cell line expressing Cas9 with a human genome-scale CRISPR-Cas9 knockout (GeCKO) lentiviral library A (hGeCKOa) of 65,383 single-guide RNAs (sgRNAs) targeting 19,050 human genes; we then subcutaneously transplanted the transduced cells into nude mice.

resultsThe transduced cells were found to proliferate and metastasize faster than the untransduced cells. Through next-generation sequencing, the genes potentially related to HCC proliferation and metastasis were identified. The sgRNAs targeting the ADAMTSL3 and PTEN genes appeared twice on the list of genes related to HCC proliferation and metastasis, respectively. Analysis based on the data mining of Oncomine revealed that the ADAMTSL3 and PTEN genes were expressed at lower levels in HCC cells than they were in normal liver cells, indicating their tumour-suppressive roles. Downregulation of ADAMTSL3 and PTEN displayed poor overall survival (OS) and predicted poor relapse-free survival (RFS), further supporting their tumour-suppressive roles. Moreover, knocking out either the ADAMTSL3 or PTEN genes promoted either the proliferation or metastasis of HCC cells, respectively.

conclusionsUsing both in vitro and in vivo approaches, we described the profound role of the ADAMTSL3 and PTEN genes. This study indicates novel candidate targets for use in HCC treatment and therapy.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsADAMTS ProteinsAnimalsCarcinoma, HepatocellularCell Line, TumorCell ProliferationExtracellular Matrix ProteinsHumansLiver NeoplasmsMaleMiceMice, Inbred StrainsMice, NudeNeoplasm MetastasisPTEN PhosphohydrolaseADAMTSL3 protein, humanADAMTS ProteinsExtracellular Matrix ProteinsPTEN PhosphohydrolasePTEN protein, humanADAMTSL3CRISPR-Cas9Hepatocellular carcinomaMetastasisProliferationPTEN

Identifiers

PMID32266537
PMCPMC11804363
OpenAlexW3014669770

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.