Evidence map›Paper›PMID 32265444›Full record

ArticleNature communications2020

Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors.

Sabra I Djomehri, Maria E Gonzalez, Felipe da Veiga Leprevost, Shilpa R Tekula, Hui-Yin Chang, Marissa J White, Ashley Cimino-Mathews, Boris Burman, Venkatesha Basrur, Pedram Argani and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
7.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 162 citations in OpenAlex.

  1. Trial
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  3. Special Issue "Breast Cancer: From Pathophysiology to Novel Therapies".International journal of molecular sciences · 2026
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Sabra I DjomehriDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0003-3790-5949
Maria E GonzalezDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Felipe da Veiga LeprevostDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Shilpa R TekulaDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0002-5086-4953
Hui-Yin ChangDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Marissa J WhiteDepartment of Pathology, Johns Hopkins University, Baltimore, MD, 21287, USA.
Ashley Cimino-MathewsDepartment of Pathology, Johns Hopkins University, Baltimore, MD, 21287, USA.
Boris BurmanDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Venkatesha BasrurDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0002-0853-9655
Pedram ArganiDepartment of Pathology, Johns Hopkins University, Baltimore, MD, 21287, USA.
Alexey I Nesvizhskii *Department of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA. nesvi@med.umich.edu.ORCID http://orcid.org/0000-0002-2806-7819
Celina G Kleer *Department of Pathology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA. kleer@umich.edu.
University of Michigan · USJohns Hopkins University · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Role of EZH2 in Breast Cancer ProgressionR01CA107469 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Celina G Kleer · 2005 to 2026
$5.9M
Role of CCN6 (WISP3) in the Progression and Metastasis of Breast Cancer.R01CA125577 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Celina G Kleer · 2008 to 2026
$5.5M
COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4M
University of Michigan Proteogenomics Data Analysis CenterU24CA210967 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHINNAIYAN, ARUL M, DHANASEKARAN, SARAVANA M · 2016 to 2020
$4.1M
Proteogenomics of Cancer Training ProgramT32CA140044 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAO, ARVIND, SARTOR, MAUREEN AGNES · 2010 to 2024
$3.9M
NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA107469NCI NIH HHS R01 CA125577NCI NIH HHS T32 CA140044NCI NIH HHS U24 CA210967NIGMS NIH HHS R01 GM094231
6 · The paper itself

Abstract

Metaplastic breast carcinoma (MBC) is a highly aggressive form of triple-negative cancer (TNBC), defined by the presence of metaplastic components of spindle, squamous, or sarcomatoid histology. The protein profiles underpinning the pathological subtypes and metastatic behavior of MBC are unknown. Using multiplex quantitative tandem mass tag-based proteomics we quantify 5798 proteins in MBC, TNBC, and normal breast from 27 patients. Comparing MBC and TNBC protein profiles we show MBC-specific increases related to epithelial-to-mesenchymal transition and extracellular matrix, and reduced metabolic pathways. MBC subtypes exhibit distinct upregulated profiles, including translation and ribosomal events in spindle, inflammation- and apical junction-related proteins in squamous, and extracellular matrix proteins in sarcomatoid subtypes. Comparison of the proteomes of human spindle MBC with mouse spindle (CCN6 knockout) MBC tumors reveals a shared spindle-specific signature of 17 upregulated proteins involved in translation and 19 downregulated proteins with roles in cell metabolism. These data identify potential subtype specific MBC biomarkers and therapeutic targets.

Indexed as

AdultAgedAged, 80 and overAnimalsBiomarkers, TumorCarcinoma, Ductal, BreastCarcinoma, Squamous CellEpithelial-Mesenchymal TransitionExtracellular MatrixFemaleHumansInflammationMetabolic Networks and PathwaysMetaplasiaMiceMiddle AgedBiomarkers, TumorProteome

Identifiers

PMID32265444
PMCPMC7138853
OpenAlexW3014955515

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.