Evidence map›Paper›PMID 32265329›Full record

ArticlemBio2020

Visualizing Association of the Retroviral Gag Protein with Unspliced Viral RNA in the Nucleus.

Rebecca J Kaddis Maldonado, Breanna Rice, Eunice C Chen, Kevin M Tuffy, Estelle F Chiari, Kelly M Fahrbach, Thomas J Hope, Leslie J Parent

Open access · goldAbstract read
In one paragraph

Article in mBio, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  6. Unveiling the DHX15-G-patch interplay in retroviral RNA packaging.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Rebecca J Kaddis MaldonadoDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Breanna RiceDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Eunice C ChenDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Kevin M TuffyDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Estelle F ChiariDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Kelly M FahrbachDepartment of Cell and Molecular Biology, Northwestern University, Chicago, Illinois, USA.
Thomas J HopeDepartment of Cell and Molecular Biology, Northwestern University, Chicago, Illinois, USA.ORCID 0000-0001-7183-8319
Leslie J ParentDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA lparent@psu.edu.ORCID 0000-0002-0431-9049
Penn State Milton S. Hershey Medical Center · USNorthwestern University · US

Funding

The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
Virus TransmissionP50AI150464 · NIAID · UNIVERSITY OF UTAH · PI HILL, CHRISTOPHER P. · 2019 to 2021
$14.9M
Nuclear Trafficking of the Retroviral Gag ProteinR01CA076534 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 1998 to 2018
$5.2M
Leica SP5 confocal microscope for live-cell imagingS10OD010756 · OD · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI BARNSTABLE, COLIN J · 2012 to 2012
$587k
Mechanistic studies of genomic RNA dimerization in an oncoretrovirusF30CA214010 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI CHEN, EUNICE C · 2017 to 2020
$162k
Nuclear Export of Retroviral RNPs: Cytoplasmic fates determined in the nucleusF31CA171862 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MALDONADO, REBECCA J.R. KADDIS · 2012 to 2015
$111k
Interaction of Oncoretroviral Gag Protein with Host Nuclear FactorsF31CA196292 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI RICE, BREANNA LYNN · 2015 to 2017
$89k
NCI NIH HHS F30 CA214010NCI NIH HHS F31 CA171862NCI NIH HHS F31 CA196292NCI NIH HHS R01 CA076534NIAID NIH HHS P50 AI150464NIGMS NIH HHS P50 GM103297NIH HHS S10 OD010756
6 · The paper itself

Abstract

Packaging of genomic RNA (gRNA) by retroviruses is essential for infectivity, yet the subcellular site of the initial interaction between the Gag polyprotein and gRNA remains poorly defined. Because retroviral particles are released from the plasma membrane, it was previously thought that Gag proteins initially bound to gRNA in the cytoplasm or at the plasma membrane. However, the Gag protein of the avian retrovirus Rous sarcoma virus (RSV) undergoes active nuclear trafficking, which is required for efficient gRNA encapsidation (L. Z. Scheifele, R. A. Garbitt, J. D. Rhoads, and L. J. Parent, Proc Natl Acad Sci U S A 99:3944-3949, 2002, https://doi.org/10.1073/pnas.062652199; R. Garbitt-Hirst, S. P. Kenney, and L. J. Parent, J Virol 83:6790-6797, 2009, https://doi.org/10.1128/JVI.00101-09). These results raise the intriguing possibility that the primary contact between Gag and gRNA might occur in the nucleus. To examine this possibility, we created a RSV proviral construct that includes 24 tandem repeats of MS2 RNA stem-loops, making it possible to track RSV viral RNA (vRNA) in live cells in which a fluorophore-conjugated MS2 coat protein is coexpressed. Using confocal microscopy, we observed that both wild-type Gag and a nuclear export mutant (Gag.L219A) colocalized with vRNA in the nucleus. In live-cell time-lapse images, the wild-type Gag protein trafficked together with vRNA as a single ribonucleoprotein (RNP) complex in the nucleoplasm near the nuclear periphery, appearing to traverse the nuclear envelope into the cytoplasm. Furthermore, biophysical imaging methods suggest that Gag and the unspliced vRNA physically interact in the nucleus. Taken together, these data suggest that RSV Gag binds unspliced vRNA to export it from the nucleus, possibly for packaging into virions as the viral genome.

Indexed as

Genome, ViralVirus AssemblyActive Transport, Cell NucleusAnimalsCell LineCell Line, TransformedCell NucleusFibroblastsGene Products, gagMicroscopy, ConfocalQuailRNA, ViralRous sarcoma virusTime-Lapse ImagingGene Products, gagRNA, ViralGag proteinsgenomic RNA packaginglive cell imagingnucleocytoplasmic traffickingretrovirus assemblyRNA traffickingRous sarcoma virus

Identifiers

PMID32265329
PMCPMC7157774
OpenAlexW3014901052

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.