Evidence map›Paper›PMID 32265283›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Reconstitution of polythioamide antibiotic backbone formation reveals unusual thiotemplated assembly strategy.

Kyle L Dunbar, Maria Dell, Finn Gude, Christian Hertweck

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  10. Substrate Recognition by the Peptidyl-(ACS chemical biology · 2022
    Article
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  17. Sulfur incorporation into biomolecules: recent advances.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kyle L DunbarDepartment of Biomolecular Chemistry, Leibniz Institute for Natural Products and Infection Biology, Hans Knöll Institute, 07745 Jena, Germany.ORCID 0000-0002-7410-5169
Maria DellDepartment of Biomolecular Chemistry, Leibniz Institute for Natural Products and Infection Biology, Hans Knöll Institute, 07745 Jena, Germany.ORCID 0000-0003-2718-2409
Finn GudeDepartment of Biomolecular Chemistry, Leibniz Institute for Natural Products and Infection Biology, Hans Knöll Institute, 07745 Jena, Germany.ORCID 0000-0002-8038-5937
Christian HertweckDepartment of Biomolecular Chemistry, Leibniz Institute for Natural Products and Infection Biology, Hans Knöll Institute, 07745 Jena, Germany; christian.hertweck@leibniz-hki.de.ORCID 0000-0002-0367-337X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Closthioamide (CTA) is a rare example of a thioamide-containing nonribosomal peptide and is one of only a handful of secondary metabolites described from obligately anaerobic bacteria. Although the biosynthetic gene cluster responsible for CTA production and the thioamide synthetase that catalyzes sulfur incorporation were recently discovered, the logic for peptide backbone assembly has remained a mystery. Here, through the use of in vitro biochemical assays, we demonstrate that the amide backbone of CTA is assembled in an unusual thiotemplated pathway involving the cooperation of a transacylating member of the papain-like cysteine protease family and an iteratively acting ATP-grasp protein. Using the ATP-grasp protein as a bioinformatic handle, we identified hundreds of such thiotemplated yet nonribosomal peptide synthetase (NRPS)-independent biosynthetic gene clusters across diverse bacterial phyla. The data presented herein not only clarify the pathway for the biosynthesis of CTA, but also provide a foundation for the discovery of additional secondary metabolites produced by noncanonical biosynthetic pathways.

Indexed as

Adenosine TriphosphateAnti-Bacterial AgentsBacteria, AnaerobicBacterial ProteinsBinding SitesBiosynthetic PathwaysComputational BiologyCysteine EndopeptidasesGenes, BacterialMultigene FamilyPeptide Biosynthesis, Nucleic Acid-IndependentSecondary MetabolismThioamidesAdenosine TriphosphateAnti-Bacterial AgentsBacterial ProteinsclosthioamideCysteine EndopeptidasesThioamidesbiosynthesisnatural productsnonribosomal peptidethiotemplated assembly

Identifiers

PMID32265283
PMCPMC7183216

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.