Evidence map›Paper›PMID 32264894›Full record

ArticleMicrobial cell factories2020

Increased production of periplasmic proteins in Escherichia coli by directed evolution of the translation initiation region.

Kiavash Mirzadeh, Patrick J Shilling, Rageia Elfageih, Alister J Cumming, Huanhuan L Cui, Maja Rennig, Morten H H Nørholm, Daniel O Daley

Abstract read
In one paragraph

Article in Microbial cell factories, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  15. Signal amplification ofSynthetic biology (Oxford, England) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kiavash MirzadehDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.
Patrick J ShillingDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.
Rageia ElfageihDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.
Alister J CummingDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.
Huanhuan L CuiDepartment of Medicine (Solna), Division of Microbial Pathogenesis, BioClinicum, Karolinska Institutet, Stockholm, Sweden.
Maja RennigNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark.
Morten H H NørholmCloneOpt AB, Stockholm, Sweden.
Daniel O DaleyDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden. ddaley@dbb.su.se.ORCID http://orcid.org/0000-0002-6425-5059

Funding

Carl Tryggers Stiftelse för Vetenskaplig Forskning CTS 18:78Vetenskapsrådet (SE) 2017-00704
6 · The paper itself

Abstract

backgroundRecombinant proteins are often engineered with an N-terminal signal peptide, which facilitates their secretion to the oxidising environment of the periplasm (gram-negative bacteria) or the culture supernatant (gram-positive bacteria). A commonly encountered problem is that the signal peptide influences the synthesis and secretion of the recombinant protein in an unpredictable manner. A molecular understanding of this phenomenon is highly sought after, as it could lead to improved methods for producing recombinant proteins in bacterial cell factories.

resultsHerein we demonstrate that signal peptides contribute to an unpredictable translation initiation region. A directed evolution approach that selects a new translation initiation region, whilst leaving the amino acid sequence of the signal peptide unchanged, can increase production levels of secreted recombinant proteins. The approach can increase production of single chain antibody fragments, hormones and other recombinant proteins in the periplasm of E. coli.

conclusionsThe study demonstrates that signal peptide performance is coupled to the efficiency of the translation initiation region.

Indexed as

Escherichia coliProtein Processing, Post-TranslationalRecombinant ProteinsRecombinant ProteinsBacteriaDirected evolutionProtein secretionRecombinant protein expressionSignal peptideTranslation initiation

Identifiers

PMID32264894
PMCPMC7137448

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.