Evidence map›Paper›PMID 32260277›Full record

ArticleInternational journal of molecular sciences2020

Mapping the Gene Expression Spectrum of Mediator Subunits in Response to Viroid Infection in Plants.

Vishnu Sukumari Nath, Ankita Shrestha, Praveen Awasthi, Ajay Kumar Mishra, Tomáš Kocábek, Jaroslav Matoušek, Andrej Sečnik, Jernej Jakše, Sebastjan Radišek, Vipin Hallan

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Influence ofPlants (Basel, Switzerland) · 2021
    Article
  7. An Inside Look into Biological Miniatures: Molecular Mechanisms of Viroids.International journal of molecular sciences · 2021
    Review
  8. Functional Analysis ofFrontiers in plant science · 2021
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Vishnu Sukumari NathBiology Centre of the Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, Branišovská 31, 370 05 Ceske Budejovice, Czech Republic.ORCID 0000-0002-3001-7626
Ankita ShresthaBiology Centre of the Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, Branišovská 31, 370 05 Ceske Budejovice, Czech Republic.
Praveen AwasthiBiology Centre of the Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, Branišovská 31, 370 05 Ceske Budejovice, Czech Republic.
Ajay Kumar MishraBiology Centre of the Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, Branišovská 31, 370 05 Ceske Budejovice, Czech Republic.
Tomáš KocábekBiology Centre of the Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, Branišovská 31, 370 05 Ceske Budejovice, Czech Republic.
Jaroslav MatoušekBiology Centre of the Czech Academy of Sciences, Department of Molecular Genetics, Institute of Plant Molecular Biology, Branišovská 31, 370 05 Ceske Budejovice, Czech Republic.ORCID 0000-0002-7490-9108
Andrej SečnikDepartment of Agronomy, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia.
Jernej JakšeDepartment of Agronomy, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia.ORCID 0000-0002-8907-1627
Sebastjan RadišekSlovenian Institute of Hop Research and Brewing, Plant Protection Department, Cesta Žalskega Tabora 2, SI-3310 Žalec, Slovenia.ORCID 0000-0002-9333-7985
Vipin HallanCSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 India.
Czech Academy of Sciences · CZUniversity of Ljubljana · SIInstitute of Himalayan Bioresource Technology · INSlovenian Institute of Hop Research and Brewing · SI

Funding

ARRS research programme P4-0077IPMB institutional support RVO:60077344MEMOBIC (EU Operational Programme Research, Development and Education) CZ.02.2.69/0.0/0.0/16_027/0008357
6 · The paper itself

Abstract

The mediator (MED) represents a large, conserved, multi-subunit protein complex that regulates gene expression through interactions with RNA polymerase II and enhancer-bound transcription factors. Expanding research accomplishments suggest the predominant role of plant MED subunits in the regulation of various physiological and developmental processes, including the biotic stress response against bacterial and fungal pathogens. However, the involvement of MED subunits in virus/viroid pathogenesis remains elusive. In this study, we investigated for the first time the gene expression modulation of selected MED subunits in response to five viroid species (

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantHumulusMediator ComplexNicotianaPlant LeavesPlant ProteinsPlant VirusesSpecies SpecificityViroidsMediator ComplexPlant Proteinsdifferential expressionhopmediator complexNicotiana benthamianaNicotiana tabacumpathogenquantitative reverse transcription PCRviroid

Identifiers

PMID32260277
PMCPMC7177877
OpenAlexW3014720773

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.